[Debian-med-packaging] Bug#733278: ITP: r-bioc-biomart -- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
Andreas Tille
tille at debian.org
Sat Dec 28 00:03:17 UTC 2013
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : r-bioc-biomart
Version : 2.18.0
Upstream Author : Steffen Durinck <sdurinck at gmail.com>
* URL : http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
* License : Artistic-2.0
Programming Lang: R
Description : GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
In recent years a wealth of biological data has become available in
public data repositories. Easy access to these valuable data resources
and firm integration with data analysis is needed for comprehensive
bioinformatics data analysis. biomaRt provides an interface to a growing
collection of databases implementing the BioMart software suite
(http://www.biomart.org). The package enables retrieval of large amounts
of data in a uniform way without the need to know the underlying
database schemas or write complex SQL queries. Examples of BioMart
databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and
dbSNP mapped to Ensembl. These major databases give biomaRt users direct
access to a diverse set of data and enable a wide range of powerful
online queries from gene annotation to database mining.
This package is another precondition to update r-bioc-cummerbund and
maintained by the Debian Med team at
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biomart/trunk/
More information about the Debian-med-packaging
mailing list