[Debian-med-packaging] Bug#733329: ITP: r-bioc-genomicfeatures -- GNU R tools for making and manipulating transcript centric annotations

Andreas Tille tille at debian.org
Sat Dec 28 16:03:19 UTC 2013


Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : r-bioc-genomicfeatures
  Version         : 1.14.2-1
  Upstream Author : M. Carlson, H. Pages, e.a.
* URL             : http://www.bioconductor.org/packages/release/bioc/html/GenomicFeatures.html
* License         : Artistic-2.0
  Programming Lang: R
  Description     : GNU R tools for making and manipulating transcript centric annotations
 A set of tools and methods for making and manipulating transcript
 centric annotations. With these tools the user can easily download the
 genomic locations of the transcripts, exons and cds of a given organism,
 from either the UCSC Genome Browser or a BioMart database (more sources
 will be supported in the future). This information is then stored in a
 local database that keeps track of the relationship between transcripts,
 exons, cds and genes. Flexible methods are provided for extracting the
 desired features in a convenient format.


This is another precondition to update r-bioc-cummerbund maintained by
Debian Med team.  It is in SVN at

    svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genomicfeatures/trunk/



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