[Debian-med-packaging] Bug#716199: [Mayhem] Bug report on samtools: maq2sam-short crashes with exit status 139

[Alexandre Rebert]

Package: samtools
Version: 0.1.19-1
Severity: normal
User: mayhem at forallsecure.com
Usertags: mayhem

maq2sam-short crashes with exit status 139. We confirmed the crash by
re-running it in a fresh debian unstable installation.

The attachment [1] contains a testcase (under ./crash) crashing the
program. It ensures that you can easily reproduce the bug. Additionally,
under ./crash_info/, we include more information about the crash such as
a core dump, the dmesg generated by the crash, and its output.

Regards,
The Mayhem Team (Alexandre Rebert, Thanassis Avgerinos, Sang Kil Cha, David Brumley, Manuel Egele)
Cylab, Carnegie Mellon University

[1] http://www.forallsecure.com/bug-reports/d3281067932defd8726e000b2d737e3e5e1971a8/full_report


-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 3.9-1-686-pae (SMP w/1 CPU core)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/dash

Versions of packages samtools depends on:
ii  libc6        2.17-6
ii  libncurses5  5.9+20130608-1
ii  libtinfo5    5.9+20130608-1
ii  zlib1g       1:1.2.8.dfsg-1

samtools recommends no packages.

Versions of packages samtools suggests:
ii  python  2.7.5-2

-- no debconf information
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