[Debian-med-packaging] Bug#716373: [Mayhem] Bug report on t-coffee: t_coffee crashes with exit status 139

[Alexandre Rebert]

Package: t-coffee
Version: 9.02.r1228-2
Severity: normal
User: mayhem at forallsecure.com
Usertags: mayhem

t_coffee crashes with exit status 139. We confirmed the crash by
re-running it in a fresh debian unstable installation.

The attachment [1] contains a testcase (under ./crash) crashing the
program. It ensures that you can easily reproduce the bug. Additionally,
under ./crash_info/, we include more information about the crash such as
a core dump, the dmesg generated by the crash, and its output.

Regards,
The Mayhem Team (Alexandre Rebert, Thanassis Avgerinos, Sang Kil Cha, David Brumley, Manuel Egele)
Cylab, Carnegie Mellon University

[1] http://www.forallsecure.com/bug-reports/06e02737becd30682c576b1c90d5487f3d5df1bc/full_report


-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 3.9-1-686-pae (SMP w/1 CPU core)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/dash

Versions of packages t-coffee depends on:
ii  libc6  2.17-6

Versions of packages t-coffee recommends:
ii  libsoap-lite-perl   0.714-1
ii  libxml-simple-perl  2.20-1
ii  tm-align            20120507-1

Versions of packages t-coffee suggests:
pn  amap-align         <none>
pn  boxshade           <none>
pn  clustalw           <none>
pn  dialign-tx         <none>
pn  kalign             <none>
pn  mafft              <none>
pn  muscle             <none>
pn  poa                <none>
pn  probcons           <none>
pn  proda              <none>
pn  seaview            <none>
pn  t-coffee-doc       <none>
pn  t-coffee-examples  <none>

-- no debconf information
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