[Debian-med-packaging] Bug#712359: biojava3-live: FTBFS: [javac] /«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:93: cannot find symbol

[David Suárez]

Source: biojava3-live
Version: 3.0.5-2
Severity: serious
Tags: jessie sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20130609 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[1]: Entering directory `/«PKGBUILDDIR»'
> cd biojava3-forester && ant jar
> Buildfile: /«PKGBUILDDIR»/biojava3-forester/build.xml
> 
> compile:
>     [mkdir] Created dir: /«PKGBUILDDIR»/build/biojava3-forester/classes
>     [mkdir] Created dir: /«PKGBUILDDIR»/dist
>     [javac] /«PKGBUILDDIR»/biojava3-forester/build.xml:70: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 332 source files to /«PKGBUILDDIR»/build/biojava3-forester/classes
>     [javac] /«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:42: cannot find symbol
>     [javac] symbol  : class DefaultFontMapper
>     [javac] location: package com.itextpdf.text.pdf
>     [javac] import com.itextpdf.text.pdf.DefaultFontMapper;
>     [javac]                             ^
>     [javac] /«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:93: cannot find symbol
>     [javac] symbol  : class DefaultFontMapper
>     [javac] location: class org.forester.archaeopteryx.PdfExporter
>     [javac]         final DefaultFontMapper mapper = new DefaultFontMapper();
>     [javac]               ^
>     [javac] /«PKGBUILDDIR»/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java:93: cannot find symbol
>     [javac] symbol  : class DefaultFontMapper
>     [javac] location: class org.forester.archaeopteryx.PdfExporter
>     [javac]         final DefaultFontMapper mapper = new DefaultFontMapper();
>     [javac]                                              ^
>     [javac] Note: Some input files use unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>     [javac] 3 errors
> 
> BUILD FAILED
> /«PKGBUILDDIR»/biojava3-forester/build.xml:70: Compile failed; see the compiler error output for details.
> 
> Total time: 13 seconds
> make[1]: *** [override_dh_auto_build] Error 1

The full build log is available from:
   http://aws-logs.debian.net/ftbfs-logs/2013/06/09/biojava3-live_3.0.5-2_unstable.log

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.