[Debian-med-packaging] Bug#713217: python-csb: FTBFS: RuntimeError: Failed to create /sbuild-nonexistent/
Lucas Nussbaum
lucas at lucas-nussbaum.net
Sat Jun 22 12:08:04 UTC 2013
Source: python-csb
Version: 1.1.1+dfsg-1
Severity: serious
Tags: jessie sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20130620 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[1]: Entering directory `/«BUILDDIR»/python-csb-1.1.1+dfsg'
> set -e; \
> for py in python2.7 python3.2 python3.3; do \
> $py -B setup.py build; \
> done
> running build
> running build_py
> creating build
> creating build/lib.linux-x86_64-2.7
> creating build/lib.linux-x86_64-2.7/csb
> copying csb/build.py -> build/lib.linux-x86_64-2.7/csb
> copying csb/__init__.py -> build/lib.linux-x86_64-2.7/csb
> creating build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/embd.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/__init__.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/promix.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/hhsearch.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/precision.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/buildhmm.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/helloworld.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/bfit.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/hhfrag.py -> build/lib.linux-x86_64-2.7/csb/apps
> copying csb/apps/bfite.py -> build/lib.linux-x86_64-2.7/csb/apps
> creating build/lib.linux-x86_64-2.7/csb/numeric
> copying csb/numeric/__init__.py -> build/lib.linux-x86_64-2.7/csb/numeric
> copying csb/numeric/integrators.py -> build/lib.linux-x86_64-2.7/csb/numeric
> creating build/lib.linux-x86_64-2.7/csb/statistics
> copying csb/statistics/__init__.py -> build/lib.linux-x86_64-2.7/csb/statistics
> copying csb/statistics/mixtures.py -> build/lib.linux-x86_64-2.7/csb/statistics
> copying csb/statistics/maxent.py -> build/lib.linux-x86_64-2.7/csb/statistics
> copying csb/statistics/ars.py -> build/lib.linux-x86_64-2.7/csb/statistics
> copying csb/statistics/scalemixture.py -> build/lib.linux-x86_64-2.7/csb/statistics
> copying csb/statistics/rand.py -> build/lib.linux-x86_64-2.7/csb/statistics
> creating build/lib.linux-x86_64-2.7/csb/statistics/pdf
> copying csb/statistics/pdf/__init__.py -> build/lib.linux-x86_64-2.7/csb/statistics/pdf
> creating build/lib.linux-x86_64-2.7/csb/statistics/samplers
> copying csb/statistics/samplers/__init__.py -> build/lib.linux-x86_64-2.7/csb/statistics/samplers
> creating build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/__init__.py -> build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/multichain.py -> build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/propagators.py -> build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/singlechain.py -> build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc
> creating build/lib.linux-x86_64-2.7/csb/core
> copying csb/core/__init__.py -> build/lib.linux-x86_64-2.7/csb/core
> creating build/lib.linux-x86_64-2.7/csb/test
> copying csb/test/__init__.py -> build/lib.linux-x86_64-2.7/csb/test
> copying csb/test/app.py -> build/lib.linux-x86_64-2.7/csb/test
> creating build/lib.linux-x86_64-2.7/csb/test/cases
> copying csb/test/cases/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases
> creating build/lib.linux-x86_64-2.7/csb/test/cases/numeric
> copying csb/test/cases/numeric/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/numeric
> copying csb/test/cases/numeric/integrators.py -> build/lib.linux-x86_64-2.7/csb/test/cases/numeric
> creating build/lib.linux-x86_64-2.7/csb/test/cases/statistics
> copying csb/test/cases/statistics/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics
> copying csb/test/cases/statistics/mixtures.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics
> copying csb/test/cases/statistics/maxent.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics
> copying csb/test/cases/statistics/ars.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics
> copying csb/test/cases/statistics/scalemixture.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics
> copying csb/test/cases/statistics/rand.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics
> creating build/lib.linux-x86_64-2.7/csb/test/cases/statistics/pdf
> copying csb/test/cases/statistics/pdf/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics/pdf
> creating build/lib.linux-x86_64-2.7/csb/test/cases/statistics/samplers
> copying csb/test/cases/statistics/samplers/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statistics/samplers
> creating build/lib.linux-x86_64-2.7/csb/test/cases/core
> copying csb/test/cases/core/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/core
> creating build/lib.linux-x86_64-2.7/csb/test/cases/io
> copying csb/test/cases/io/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/io
> creating build/lib.linux-x86_64-2.7/csb/test/cases/statmech
> copying csb/test/cases/statmech/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statmech
> copying csb/test/cases/statmech/wham.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statmech
> copying csb/test/cases/statmech/ensembles.py -> build/lib.linux-x86_64-2.7/csb/test/cases/statmech
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio
> copying csb/test/cases/bio/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/structure
> copying csb/test/cases/bio/structure/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/structure
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/nmr
> copying csb/test/cases/bio/nmr/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/nmr
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/hmm
> copying csb/test/cases/bio/hmm/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/hmm
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/fragments
> copying csb/test/cases/bio/fragments/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/fragments
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io
> copying csb/test/cases/bio/io/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/fasta
> copying csb/test/cases/bio/io/fasta/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/fasta
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/clans
> copying csb/test/cases/bio/io/clans/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/clans
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/whatif
> copying csb/test/cases/bio/io/whatif/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/whatif
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/isites
> copying csb/test/cases/bio/io/isites/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/isites
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/wwpdb
> copying csb/test/cases/bio/io/wwpdb/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/wwpdb
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/hhpred
> copying csb/test/cases/bio/io/hhpred/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/hhpred
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/mrc
> copying csb/test/cases/bio/io/mrc/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/mrc
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/procheck
> copying csb/test/cases/bio/io/procheck/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/procheck
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/sequence
> copying csb/test/cases/bio/sequence/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/sequence
> creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/utils
> copying csb/test/cases/bio/utils/__init__.py -> build/lib.linux-x86_64-2.7/csb/test/cases/bio/utils
> creating build/lib.linux-x86_64-2.7/csb/io
> copying csb/io/__init__.py -> build/lib.linux-x86_64-2.7/csb/io
> copying csb/io/tsv.py -> build/lib.linux-x86_64-2.7/csb/io
> copying csb/io/plots.py -> build/lib.linux-x86_64-2.7/csb/io
> creating build/lib.linux-x86_64-2.7/csb/statmech
> copying csb/statmech/__init__.py -> build/lib.linux-x86_64-2.7/csb/statmech
> copying csb/statmech/wham.py -> build/lib.linux-x86_64-2.7/csb/statmech
> copying csb/statmech/ensembles.py -> build/lib.linux-x86_64-2.7/csb/statmech
> creating build/lib.linux-x86_64-2.7/csb/bio
> copying csb/bio/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio
> creating build/lib.linux-x86_64-2.7/csb/bio/structure
> copying csb/bio/structure/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/structure
> creating build/lib.linux-x86_64-2.7/csb/bio/nmr
> copying csb/bio/nmr/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/nmr
> creating build/lib.linux-x86_64-2.7/csb/bio/hmm
> copying csb/bio/hmm/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/hmm
> copying csb/bio/hmm/pseudocounts.py -> build/lib.linux-x86_64-2.7/csb/bio/hmm
> creating build/lib.linux-x86_64-2.7/csb/bio/fragments
> copying csb/bio/fragments/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/fragments
> copying csb/bio/fragments/rosetta.py -> build/lib.linux-x86_64-2.7/csb/bio/fragments
> copying csb/bio/fragments/isites.py -> build/lib.linux-x86_64-2.7/csb/bio/fragments
> copying csb/bio/fragments/hhsites.py -> build/lib.linux-x86_64-2.7/csb/bio/fragments
> creating build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/fasta.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/svg.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/clans.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/psipred.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/wwpdb.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/mrc.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/hhpred.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/procheck.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/dssp.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/vasco.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/isites.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> copying csb/bio/io/whatif.py -> build/lib.linux-x86_64-2.7/csb/bio/io
> creating build/lib.linux-x86_64-2.7/csb/bio/sequence
> copying csb/bio/sequence/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/sequence
> creating build/lib.linux-x86_64-2.7/csb/bio/utils
> copying csb/bio/utils/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/utils
> creating build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/1C3W_10.mrc -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/csb.tsv -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/2JZC.sum -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/d1ea0a1.hhr -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/1nz9A.frags -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/d1nz0a_.mfasta -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/ISL5.1.isl -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/1d3z.regular.pdb -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/3p1u.pdb -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/pdbout.txt -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/standard.tsv -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/1d3z.legacy.pdb -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/d1nz0a_.a3m -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/struct.ali.mfasta -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/out.clans -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/1nz9.pdb -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/test.fa -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/d1nz0a_.hhm -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/d1nz0a_.pdb -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/test.hhm -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/3shm_ca.pdb -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/d1b24a2.hhm -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/ake-xray-ensemble-ca.pdb -> build/lib.linux-x86_64-2.7/csb/test/data
> copying csb/test/data/test2.hhm -> build/lib.linux-x86_64-2.7/csb/test/data
> creating build/lib.linux-x86_64-2.7/csb/bio/nmr/resources
> copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> build/lib.linux-x86_64-2.7/csb/bio/nmr/resources
> copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> build/lib.linux-x86_64-2.7/csb/bio/nmr/resources
> warning: build_py: byte-compiling is disabled, skipping.
>
> running build
> running build_py
> creating build/lib
> creating build/lib/csb
> copying csb/build.py -> build/lib/csb
> copying csb/__init__.py -> build/lib/csb
> creating build/lib/csb/apps
> copying csb/apps/embd.py -> build/lib/csb/apps
> copying csb/apps/__init__.py -> build/lib/csb/apps
> copying csb/apps/promix.py -> build/lib/csb/apps
> copying csb/apps/hhsearch.py -> build/lib/csb/apps
> copying csb/apps/precision.py -> build/lib/csb/apps
> copying csb/apps/buildhmm.py -> build/lib/csb/apps
> copying csb/apps/helloworld.py -> build/lib/csb/apps
> copying csb/apps/bfit.py -> build/lib/csb/apps
> copying csb/apps/hhfrag.py -> build/lib/csb/apps
> copying csb/apps/bfite.py -> build/lib/csb/apps
> creating build/lib/csb/numeric
> copying csb/numeric/__init__.py -> build/lib/csb/numeric
> copying csb/numeric/integrators.py -> build/lib/csb/numeric
> creating build/lib/csb/statistics
> copying csb/statistics/__init__.py -> build/lib/csb/statistics
> copying csb/statistics/mixtures.py -> build/lib/csb/statistics
> copying csb/statistics/maxent.py -> build/lib/csb/statistics
> copying csb/statistics/ars.py -> build/lib/csb/statistics
> copying csb/statistics/scalemixture.py -> build/lib/csb/statistics
> copying csb/statistics/rand.py -> build/lib/csb/statistics
> creating build/lib/csb/statistics/pdf
> copying csb/statistics/pdf/__init__.py -> build/lib/csb/statistics/pdf
> creating build/lib/csb/statistics/samplers
> copying csb/statistics/samplers/__init__.py -> build/lib/csb/statistics/samplers
> creating build/lib/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/__init__.py -> build/lib/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/multichain.py -> build/lib/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/propagators.py -> build/lib/csb/statistics/samplers/mc
> copying csb/statistics/samplers/mc/singlechain.py -> build/lib/csb/statistics/samplers/mc
> creating build/lib/csb/core
> copying csb/core/__init__.py -> build/lib/csb/core
> creating build/lib/csb/test
> copying csb/test/__init__.py -> build/lib/csb/test
> copying csb/test/app.py -> build/lib/csb/test
> creating build/lib/csb/test/cases
> copying csb/test/cases/__init__.py -> build/lib/csb/test/cases
> creating build/lib/csb/test/cases/numeric
> copying csb/test/cases/numeric/__init__.py -> build/lib/csb/test/cases/numeric
> copying csb/test/cases/numeric/integrators.py -> build/lib/csb/test/cases/numeric
> creating build/lib/csb/test/cases/statistics
> copying csb/test/cases/statistics/__init__.py -> build/lib/csb/test/cases/statistics
> copying csb/test/cases/statistics/mixtures.py -> build/lib/csb/test/cases/statistics
> copying csb/test/cases/statistics/maxent.py -> build/lib/csb/test/cases/statistics
> copying csb/test/cases/statistics/ars.py -> build/lib/csb/test/cases/statistics
> copying csb/test/cases/statistics/scalemixture.py -> build/lib/csb/test/cases/statistics
> copying csb/test/cases/statistics/rand.py -> build/lib/csb/test/cases/statistics
> creating build/lib/csb/test/cases/statistics/pdf
> copying csb/test/cases/statistics/pdf/__init__.py -> build/lib/csb/test/cases/statistics/pdf
> creating build/lib/csb/test/cases/statistics/samplers
> copying csb/test/cases/statistics/samplers/__init__.py -> build/lib/csb/test/cases/statistics/samplers
> creating build/lib/csb/test/cases/core
> copying csb/test/cases/core/__init__.py -> build/lib/csb/test/cases/core
> creating build/lib/csb/test/cases/io
> copying csb/test/cases/io/__init__.py -> build/lib/csb/test/cases/io
> creating build/lib/csb/test/cases/statmech
> copying csb/test/cases/statmech/__init__.py -> build/lib/csb/test/cases/statmech
> copying csb/test/cases/statmech/wham.py -> build/lib/csb/test/cases/statmech
> copying csb/test/cases/statmech/ensembles.py -> build/lib/csb/test/cases/statmech
> creating build/lib/csb/test/cases/bio
> copying csb/test/cases/bio/__init__.py -> build/lib/csb/test/cases/bio
> creating build/lib/csb/test/cases/bio/structure
> copying csb/test/cases/bio/structure/__init__.py -> build/lib/csb/test/cases/bio/structure
> creating build/lib/csb/test/cases/bio/nmr
> copying csb/test/cases/bio/nmr/__init__.py -> build/lib/csb/test/cases/bio/nmr
> creating build/lib/csb/test/cases/bio/hmm
> copying csb/test/cases/bio/hmm/__init__.py -> build/lib/csb/test/cases/bio/hmm
> creating build/lib/csb/test/cases/bio/fragments
> copying csb/test/cases/bio/fragments/__init__.py -> build/lib/csb/test/cases/bio/fragments
> creating build/lib/csb/test/cases/bio/io
> copying csb/test/cases/bio/io/__init__.py -> build/lib/csb/test/cases/bio/io
> creating build/lib/csb/test/cases/bio/io/fasta
> copying csb/test/cases/bio/io/fasta/__init__.py -> build/lib/csb/test/cases/bio/io/fasta
> creating build/lib/csb/test/cases/bio/io/clans
> copying csb/test/cases/bio/io/clans/__init__.py -> build/lib/csb/test/cases/bio/io/clans
> creating build/lib/csb/test/cases/bio/io/whatif
> copying csb/test/cases/bio/io/whatif/__init__.py -> build/lib/csb/test/cases/bio/io/whatif
> creating build/lib/csb/test/cases/bio/io/isites
> copying csb/test/cases/bio/io/isites/__init__.py -> build/lib/csb/test/cases/bio/io/isites
> creating build/lib/csb/test/cases/bio/io/wwpdb
> copying csb/test/cases/bio/io/wwpdb/__init__.py -> build/lib/csb/test/cases/bio/io/wwpdb
> creating build/lib/csb/test/cases/bio/io/hhpred
> copying csb/test/cases/bio/io/hhpred/__init__.py -> build/lib/csb/test/cases/bio/io/hhpred
> creating build/lib/csb/test/cases/bio/io/mrc
> copying csb/test/cases/bio/io/mrc/__init__.py -> build/lib/csb/test/cases/bio/io/mrc
> creating build/lib/csb/test/cases/bio/io/procheck
> copying csb/test/cases/bio/io/procheck/__init__.py -> build/lib/csb/test/cases/bio/io/procheck
> creating build/lib/csb/test/cases/bio/sequence
> copying csb/test/cases/bio/sequence/__init__.py -> build/lib/csb/test/cases/bio/sequence
> creating build/lib/csb/test/cases/bio/utils
> copying csb/test/cases/bio/utils/__init__.py -> build/lib/csb/test/cases/bio/utils
> creating build/lib/csb/io
> copying csb/io/__init__.py -> build/lib/csb/io
> copying csb/io/tsv.py -> build/lib/csb/io
> copying csb/io/plots.py -> build/lib/csb/io
> creating build/lib/csb/statmech
> copying csb/statmech/__init__.py -> build/lib/csb/statmech
> copying csb/statmech/wham.py -> build/lib/csb/statmech
> copying csb/statmech/ensembles.py -> build/lib/csb/statmech
> creating build/lib/csb/bio
> copying csb/bio/__init__.py -> build/lib/csb/bio
> creating build/lib/csb/bio/structure
> copying csb/bio/structure/__init__.py -> build/lib/csb/bio/structure
> creating build/lib/csb/bio/nmr
> copying csb/bio/nmr/__init__.py -> build/lib/csb/bio/nmr
> creating build/lib/csb/bio/hmm
> copying csb/bio/hmm/__init__.py -> build/lib/csb/bio/hmm
> copying csb/bio/hmm/pseudocounts.py -> build/lib/csb/bio/hmm
> creating build/lib/csb/bio/fragments
> copying csb/bio/fragments/__init__.py -> build/lib/csb/bio/fragments
> copying csb/bio/fragments/rosetta.py -> build/lib/csb/bio/fragments
> copying csb/bio/fragments/isites.py -> build/lib/csb/bio/fragments
> copying csb/bio/fragments/hhsites.py -> build/lib/csb/bio/fragments
> creating build/lib/csb/bio/io
> copying csb/bio/io/fasta.py -> build/lib/csb/bio/io
> copying csb/bio/io/svg.py -> build/lib/csb/bio/io
> copying csb/bio/io/__init__.py -> build/lib/csb/bio/io
> copying csb/bio/io/clans.py -> build/lib/csb/bio/io
> copying csb/bio/io/psipred.py -> build/lib/csb/bio/io
> copying csb/bio/io/wwpdb.py -> build/lib/csb/bio/io
> copying csb/bio/io/mrc.py -> build/lib/csb/bio/io
> copying csb/bio/io/hhpred.py -> build/lib/csb/bio/io
> copying csb/bio/io/procheck.py -> build/lib/csb/bio/io
> copying csb/bio/io/dssp.py -> build/lib/csb/bio/io
> copying csb/bio/io/vasco.py -> build/lib/csb/bio/io
> copying csb/bio/io/isites.py -> build/lib/csb/bio/io
> copying csb/bio/io/whatif.py -> build/lib/csb/bio/io
> creating build/lib/csb/bio/sequence
> copying csb/bio/sequence/__init__.py -> build/lib/csb/bio/sequence
> creating build/lib/csb/bio/utils
> copying csb/bio/utils/__init__.py -> build/lib/csb/bio/utils
> creating build/lib/csb/test/data
> copying csb/test/data/1C3W_10.mrc -> build/lib/csb/test/data
> copying csb/test/data/csb.tsv -> build/lib/csb/test/data
> copying csb/test/data/2JZC.sum -> build/lib/csb/test/data
> copying csb/test/data/d1ea0a1.hhr -> build/lib/csb/test/data
> copying csb/test/data/1nz9A.frags -> build/lib/csb/test/data
> copying csb/test/data/d1nz0a_.mfasta -> build/lib/csb/test/data
> copying csb/test/data/ISL5.1.isl -> build/lib/csb/test/data
> copying csb/test/data/1d3z.regular.pdb -> build/lib/csb/test/data
> copying csb/test/data/3p1u.pdb -> build/lib/csb/test/data
> copying csb/test/data/pdbout.txt -> build/lib/csb/test/data
> copying csb/test/data/standard.tsv -> build/lib/csb/test/data
> copying csb/test/data/1d3z.legacy.pdb -> build/lib/csb/test/data
> copying csb/test/data/d1nz0a_.a3m -> build/lib/csb/test/data
> copying csb/test/data/struct.ali.mfasta -> build/lib/csb/test/data
> copying csb/test/data/out.clans -> build/lib/csb/test/data
> copying csb/test/data/1nz9.pdb -> build/lib/csb/test/data
> copying csb/test/data/test.fa -> build/lib/csb/test/data
> copying csb/test/data/d1nz0a_.hhm -> build/lib/csb/test/data
> copying csb/test/data/d1nz0a_.pdb -> build/lib/csb/test/data
> copying csb/test/data/test.hhm -> build/lib/csb/test/data
> copying csb/test/data/3shm_ca.pdb -> build/lib/csb/test/data
> copying csb/test/data/d1b24a2.hhm -> build/lib/csb/test/data
> copying csb/test/data/ake-xray-ensemble-ca.pdb -> build/lib/csb/test/data
> copying csb/test/data/test2.hhm -> build/lib/csb/test/data
> creating build/lib/csb/bio/nmr/resources
> copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> build/lib/csb/bio/nmr/resources
> copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> build/lib/csb/bio/nmr/resources
> warning: build_py: byte-compiling is disabled, skipping.
>
> running build
> running build_py
> warning: build_py: byte-compiling is disabled, skipping.
>
> mkdir -p /«BUILDDIR»/python-csb-1.1.1+dfsg/docs/api
> epydoc --html -o /«BUILDDIR»/python-csb-1.1.1+dfsg/docs/api --name CSB --no-private --introspect-only --exclude csb.test.cases --fail-on-error --fail-on-warning --fail-on-docstring-warning /«BUILDDIR»/python-csb-1.1.1+dfsg/csb
> [.........
> +---------------------------------------------------------------------
> | In /«BUILDDIR»/python-csb-1.1.1+dfsg/csb/io/plots.py:
> | No documentation available!
> | Error: Import failed:
> | RuntimeError: Failed to create /sbuild-nonexistent/
> | .matplotlib; consider setting MPLCONFIGDIR to a writable
> | directory for matplotlib configuration data (line 53)
> |
> [..........
> +---------------------------------------------------------------------
> | In /«BUILDDIR»/python-csb-1.1.1+dfsg/csb/apps/
> | precision.py:
> | No documentation available!
> | Error: Import failed:
> | RuntimeError: Failed to create /sbuild-nonexistent/
> | .matplotlib; consider setting MPLCONFIGDIR to a writable
> | directory for matplotlib configuration data (line 8)
> |
> [.........................................................................]
> Warning: 1 markup error was found while processing docstrings. Use
> the verbose switch (-v) to display markup errors.
> make[1]: *** [override_dh_auto_build] Error 2
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2013/06/20/python-csb_1.1.1+dfsg-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
More information about the Debian-med-packaging
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