[Debian-med-packaging] Bug#708454: biomaj: FTBFS: [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:991: cannot find symbol

Nathan Handler nhandler at debian.org
Wed May 15 20:07:14 UTC 2013 

Source: biomaj
Version: 1.2.1-1
Severity: serious
Tags: jessie sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20130514 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[1]: Entering directory `/«PKGBUILDDIR»'
> echo 
> 
> ant -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 -f usr/share/biomaj/build.xml
> Buildfile: /«PKGBUILDDIR»/usr/share/biomaj/build.xml
> 
> test_env:
> 
> compile:
>     [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/build/classes
>     [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/dist
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 137 source files to /«PKGBUILDDIR»/usr/share/biomaj/build/classes
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:717: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 									FormFactory.DEFAULT_ROWSPEC,
>     [javac] 									^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:718: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 									FormFactory.LINE_GAP_ROWSPEC,
>     [javac] 									^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:719: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 									FormFactory.DEFAULT_ROWSPEC,
>     [javac] 									^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:720: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 									FormFactory.LINE_GAP_ROWSPEC,
>     [javac] 									^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:721: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 									FormFactory.DEFAULT_ROWSPEC,
>     [javac] 									^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:722: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 									FormFactory.LINE_GAP_ROWSPEC,
>     [javac] 									^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:735: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:737: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:739: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:741: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:743: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:745: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:749: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.DEFAULT_ROWSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:750: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LINE_GAP_ROWSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:751: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.DEFAULT_ROWSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:752: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LINE_GAP_ROWSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:753: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.DEFAULT_ROWSPEC
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:915: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:917: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:918: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.DEFAULT_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:919: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:979: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:981: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:983: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:985: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:987: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:989: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:991: cannot find symbol
>     [javac] symbol  : variable FormFactory
>     [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger
>     [javac] 											FormFactory.LABEL_COMPONENT_GAP_COLSPEC,
>     [javac] 											^
>     [javac] Note: Some input files use or override a deprecated API.
>     [javac] Note: Recompile with -Xlint:deprecation for details.
>     [javac] Note: Some input files use unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>     [javac] 28 errors
> 
> BUILD FAILED
> /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: Compile failed; see the compiler error output for details.
> 
> Total time: 11 seconds
> make[1]: *** [override_dh_auto_build] Error 1

The full build log is available from:
   http://people.debian.org/~nhandler/logs/2013/05/14/biomaj_1.2.1-1_unstable.log

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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