[Debian-med-packaging] [mrtrix] 02/09: Merge tag 'upstream/0.2.11'
Michael Hanke
mih at alioth.debian.org
Sat Oct 5 08:59:00 UTC 2013
This is an automated email from the git hooks/post-receive script.
mih pushed a commit to branch master
in repository mrtrix.
commit c5dba459a75857467a96a55634b1f4e282b14c54
Merge: e710cc9 a758c7f
Author: Michael Hanke <michael.hanke at gmail.com>
Date: Fri Sep 27 11:34:43 2013 +0200
Merge tag 'upstream/0.2.11'
Upstream version 0.2.11
# gpg: Signature made Fri 27 Sep 2013 11:34:15 AM CEST using RSA key ID 7FFB9E9B
# gpg: checking the trustdb
# gpg: 3 marginal(s) needed, 1 complete(s) needed, PGP trust model
# gpg: depth: 0 valid: 2 signed: 7 trust: 0-, 0q, 0n, 0m, 0f, 2u
# gpg: depth: 1 valid: 7 signed: 113 trust: 5-, 0q, 0n, 0m, 2f, 0u
# gpg: depth: 2 valid: 10 signed: 99 trust: 9-, 0q, 0n, 0m, 1f, 0u
# gpg: depth: 3 valid: 1 signed: 0 trust: 1-, 0q, 0n, 0m, 0f, 0u
# gpg: next trustdb check due at 2014-05-11
# gpg: Good signature from "Michael Hanke <michael.hanke at gmail.com>"
# gpg: aka "Michael Hanke <michael.hanke at dartmouth.edu>"
# gpg: aka "Michael Hanke <michael.hanke at ovgu.de>"
# gpg: aka "[jpeg image of size 1962]"
# gpg: aka "Michael Hanke <mih at voxindeserto.de>"
# gpg: aka "Michael Hanke <mih at debian.org>"
Doxyfile | 1462 ++++++-----
build | 62 +-
cmd/cleanup_ANTS_warp.cpp | 122 +
cmd/disp_profile.cpp | 2 +-
cmd/filter_tracks.cpp | 131 +-
cmd/mrcat.cpp | 21 +
cmd/mrconvert.cpp | 6 +-
cmd/mrtransform.cpp | 6 +-
cmd/read_dicom.cpp | 38 +-
cmd/streamtrack.cpp | 8 +-
cmd/tracks2prob.cpp | 32 +-
cmd/tracks2vtk.cpp | 4 +-
doc/appendix/config.html | 6 +-
doc/appendix/index.html | 6 +-
doc/appendix/mrtrix.html | 6 +-
doc/appendix/refs.html | 6 +-
doc/commands/average.html | 8 +-
.../{mrinfo.html => cleanup_ANTS_warp.html} | 30 +-
doc/commands/csdeconv.html | 8 +-
doc/commands/dicom_filename.html | 6 +-
doc/commands/dir2amp.html | 6 +-
doc/commands/disp_profile.html | 6 +-
doc/commands/dwi2SH.html | 6 +-
doc/commands/dwi2tensor.html | 6 +-
doc/commands/erode.html | 6 +-
doc/commands/estimate_response.html | 6 +-
doc/commands/filter_tracks.html | 14 +-
doc/commands/find_SH_peaks.html | 6 +-
doc/commands/gen_ROI.html | 6 +-
doc/commands/gen_WM_mask.html | 6 +-
doc/commands/gen_unit_warp.html | 6 +-
doc/commands/gendir.html | 6 +-
doc/commands/import_tracks.html | 6 +-
doc/commands/index.html | 5 +-
doc/commands/median3D.html | 6 +-
doc/commands/mrabs.html | 6 +-
doc/commands/mradd.html | 6 +-
doc/commands/mrcat.html | 6 +-
doc/commands/mrconvert.html | 6 +-
doc/commands/mrinfo.html | 6 +-
doc/commands/mrmult.html | 6 +-
doc/commands/mrstats.html | 6 +-
doc/commands/mrtransform.html | 6 +-
doc/commands/mrview.html | 6 +-
doc/commands/normalise_tracks.html | 6 +-
doc/commands/read_dicom.html | 6 +-
doc/commands/read_ximg.html | 6 +-
doc/commands/resample_tracks.html | 6 +-
doc/commands/sample_tracks.html | 6 +-
doc/commands/sdeconv.html | 6 +-
doc/commands/select_tracks.html | 6 +-
doc/commands/streamtrack.html | 6 +-
doc/commands/tensor2ADC.html | 6 +-
doc/commands/tensor2FA.html | 6 +-
doc/commands/tensor2vector.html | 6 +-
doc/commands/tensor_metric.html | 6 +-
doc/commands/threshold.html | 6 +-
doc/commands/track_info.html | 6 +-
doc/commands/tracks2prob.html | 8 +-
doc/commands/tracks2vtk.html | 6 +-
doc/commands/truncate_tracks.html | 6 +-
doc/faq.html | 6 +-
doc/general/cmdline.html | 6 +-
doc/general/formats.html | 6 +-
doc/general/index.html | 6 +-
doc/general/mrview.html | 6 +-
doc/general/overview.html | 6 +-
doc/index.html | 8 +-
doc/install/index.html | 6 +-
doc/install/macosx.html | 8 +-
doc/install/unix.html | 10 +-
doc/install/windows.html | 6 +-
doc/intro.html | 6 +-
doc/tractography/dwi.html | 6 +-
doc/tractography/index.html | 6 +-
doc/tractography/preprocess.html | 6 +-
doc/tractography/roi.html | 6 +-
doc/tractography/tracking.html | 6 +-
icons/tracks.png | Bin 0 -> 3779 bytes
icons/tracks.svg | 289 +++
install_mime_types.sh | 14 +
lib/file/dicom/csa_entry.h | 2 +-
lib/file/dicom/dict.cpp | 2526 ++++++++++++++++----
lib/file/dicom/element.cpp | 68 +-
lib/file/dicom/element.h | 12 +-
lib/file/dicom/image.cpp | 456 +++-
lib/file/dicom/image.h | 161 +-
lib/file/dicom/mapper.cpp | 298 +--
lib/file/dicom/select_cmdline.cpp | 1 -
lib/file/dicom/series.cpp | 3 +-
lib/file/dicom/series.h | 8 -
lib/file/dicom/tree.cpp | 8 +-
lib/file/mmap.cpp | 28 +-
lib/file/mmap.h | 2 +-
lib/image/format/dicom.cpp | 16 +-
lib/image/format/list.cpp | 2 +
lib/image/format/list.h | 2 +-
lib/image/format/mrtrix.cpp | 49 +-
lib/image/format/nifti1.cpp | 58 +-
lib/image/header.cpp | 4 +-
lib/image/mapper.cpp | 184 +-
lib/image/mapper.h | 45 +-
lib/image/object.cpp | 5 +
lib/image/object.h | 14 +-
lib/math/matrix.cpp | 1 -
lib/mrtrix.cpp | 3 +-
lib/mrtrix.h | 9 +-
lib/svn_revision.h | 2 +-
matlab/write_mrtrix.m | 25 +-
matlab/write_mrtrix_tracks.m | 1 +
mrtrix-mime.xml | 49 +
mrtrix-mrview.desktop | 12 +
src/doc/appendix/config.html | 98 -
src/doc/appendix/gpl-3.0.html | 690 ------
src/doc/appendix/index.html | 35 -
src/doc/appendix/mrtrix.html | 178 --
src/doc/appendix/refs.html | 58 -
src/doc/faq.html | 386 ---
src/doc/general/cmdline.html | 363 ---
src/doc/general/data_order.png | Bin 11766 -> 0 bytes
src/doc/general/filemenu.png | Bin 19004 -> 0 bytes
src/doc/general/fileopen.png | Bin 24186 -> 0 bytes
src/doc/general/fileproperties.png | Bin 30171 -> 0 bytes
src/doc/general/focus_ax.png | Bin 65017 -> 0 bytes
src/doc/general/focus_sag.png | Bin 79493 -> 0 bytes
src/doc/general/formats.html | 358 ---
src/doc/general/index.html | 83 -
src/doc/general/mrview.html | 276 ---
src/doc/general/mrview.png | Bin 76599 -> 0 bytes
src/doc/general/new_roi.png | Bin 78182 -> 0 bytes
src/doc/general/open_track.png | Bin 160890 -> 0 bytes
src/doc/general/orientation_overlay.png | Bin 198817 -> 0 bytes
src/doc/general/orientation_plot.png | Bin 155913 -> 0 bytes
src/doc/general/overlay.png | Bin 138044 -> 0 bytes
src/doc/general/overview.html | 193 --
src/doc/general/roi.png | Bin 90206 -> 0 bytes
src/doc/general/screenshot.png | Bin 108698 -> 0 bytes
src/doc/general/sidebar.png | Bin 70828 -> 0 bytes
src/doc/general/track_colour.png | Bin 245915 -> 0 bytes
src/doc/home.png | Bin 654 -> 0 bytes
src/doc/index.html | 72 -
src/doc/install/index.html | 52 -
src/doc/install/macosx.html | 133 --
src/doc/install/unix.html | 284 ---
src/doc/install/windows.html | 109 -
src/doc/intro.html | 164 --
src/doc/left.png | Bin 459 -> 0 bytes
src/doc/right.png | Bin 472 -> 0 bytes
src/doc/stylesheet.css | 63 -
src/doc/tractography/anat.png | Bin 66931 -> 0 bytes
src/doc/tractography/cst_csd.png | Bin 240404 -> 0 bytes
src/doc/tractography/cst_dt.png | Bin 175090 -> 0 bytes
src/doc/tractography/cst_dt_exclude.png | Bin 176741 -> 0 bytes
src/doc/tractography/cst_dt_include.png | Bin 175469 -> 0 bytes
src/doc/tractography/cst_dt_mask.png | Bin 181698 -> 0 bytes
src/doc/tractography/cst_seed.png | Bin 45789 -> 0 bytes
src/doc/tractography/dwi.html | 226 --
src/doc/tractography/dwi.png | Bin 48690 -> 0 bytes
src/doc/tractography/focus.png | Bin 33293 -> 0 bytes
src/doc/tractography/index.html | 60 -
src/doc/tractography/position.png | Bin 67004 -> 0 bytes
src/doc/tractography/preprocess.html | 247 --
src/doc/tractography/response_function.png | Bin 27541 -> 0 bytes
src/doc/tractography/roi.html | 90 -
src/doc/tractography/tdi.png | Bin 116755 -> 0 bytes
src/doc/tractography/tracking.html | 164 --
src/doc/tractography/whole_brain.png | Bin 327405 -> 0 bytes
src/doc/up.png | Bin 406 -> 0 bytes
src/dwi/gradient.cpp | 11 +-
src/dwi/render_frame.cpp | 8 +-
src/dwi/render_frame.h | 13 +-
src/dwi/tractography/file.cpp | 6 +-
src/dwi/tractography/file.h | 3 +
src/dwi/tractography/tracker/base.cpp | 9 +-
src/dwi/tractography/tracker/base.h | 12 +-
src/mrview/mode/normal.cpp | 3 +-
src/mrview/sidebar/overlay.cpp | 7 +-
src/mrview/sidebar/roi_analysis.cpp | 11 +-
src/mrview/sidebar/roi_analysis.h | 4 +-
src/mrview/sidebar/roi_analysis/roi_list.cpp | 37 +-
src/mrview/sidebar/roi_analysis/roi_list.h | 6 +-
src/mrview/sidebar/tractography/track_list.cpp | 6 +-
src/mrview/slice.cpp | 2 +-
src/mrview/slice.h | 4 +
src/mrview/window.cpp | 12 +-
sysconf/darwin.py | 10 +-
sysconf/linux.py | 3 +-
sysconf/windows.py | 18 +-
188 files changed, 4891 insertions(+), 6368 deletions(-)
--
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/mrtrix.git
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