[Debian-med-packaging] Bug#723242: Bug#723242: bowtie2 link with -L/usr/lib

[Alex Mestiashvili]

On 09/17/2013 12:28 PM, YunQiang Su wrote:
> Package: bowtie2
> Version: 2.1.0-2
> X-Debbugs-CC: wzssyqa at gmail.com
>
> This package has one or more -L/usr/lib in its build system,
> which will make it ftbfs if there is libraries under /usr/lib,
> while is not the default architecture, mips* for example.
>
> On mips* systems, /usr/lib is defined as place to hold O32
> libraries, and /usr/lib32 for N32, and /usr/lib64 is for N64.
>
> Beside the way, on the multiarch system like Debian, user may install
> libraries under /usr/lib by hand.
>
> Please use the default search path if you can, and please consider fix
> this.
>
> I will try to fix this bug, while if you can help to fix it,
> It will be very appreciative.
>
> The attachement is the buildlog of this package on mips64el platform.
>
Dear YunQiang Su,

I couldn't find any occurrences of "-L/usr/lib" in the code.
Besides from that it is not build for mips* architectures.

You can see the build status here: 
https://buildd.debian.org/status/package.php?p=bowtie2

Regards,
Alex