[Debian-med-packaging] Bug#744620: librostlab-blast: run dh-autoreconf to update config.{sub, guess} and {libtool, aclocal}.m4

[Matthias Klose]

Package: src:librostlab-blast
Version: 1.0.1-2
User: debian-devel at lists.debian.org
Usertags: autoreconf

The package fails to build on ppc64el (powerpc64le-linux-gnu), because
the config.{guess,sub} files are out of date, and are not updated during
the build.  If possible, please do not update these files directly,
but build-depend on autotools-dev instead, and use the tools provided
by autotools-dev to update these files.

  - For dh, call dh --with autoreconf.

  - For cdbs based build systems, include
    /usr/share/cdbs/1/rules/autoreconf.mk

  - For other rules files, call dh_autoreconf before calling
    configure (in the build or configure target), and call
    dh_autoreconf_clean before dh_clean in the clean target.

For combining autoreconf and autotools_dev, see bug #698765.

After the build on any architecture, and before a clean, a grep for
powerpc64le in the configure, aclocal.m4 and/or libtool.m4 file(s)
should print some lines. It is not enough to just update the
config.guess and config.sub files.

The full build log can be found at:
http://people.debian.org/~doko/logs/ppc64el-20140414/buildlog_ubuntu-trusty-ppc64el.librostlab-blast_1.0.1-2_FAILEDTOBUILD.txt
The last lines of the build log are at the end of this report.

Please note that these builds were done in an Ubuntu development,
environment there may be a few false positives in these bug reports.

See https://wiki.debian.org/qa.debian.org/FTBFS for a guide how to
address these.

[...]
make[1]: Leaving directory `/build/buildd/librostlab-blast-1.0.1'
   dh_auto_test -a -O--parallel
make[1]: Entering directory `/build/buildd/librostlab-blast-1.0.1'
Making check in lib
make[2]: Entering directory `/build/buildd/librostlab-blast-1.0.1/lib'
make  check-am
make[3]: Entering directory `/build/buildd/librostlab-blast-1.0.1/lib'
make[3]: Nothing to be done for `check-am'.
make[3]: Leaving directory `/build/buildd/librostlab-blast-1.0.1/lib'
make[2]: Leaving directory `/build/buildd/librostlab-blast-1.0.1/lib'
make[2]: Entering directory `/build/buildd/librostlab-blast-1.0.1'
make[2]: Leaving directory `/build/buildd/librostlab-blast-1.0.1'
make[1]: Leaving directory `/build/buildd/librostlab-blast-1.0.1'
 /usr/bin/fakeroot debian/rules binary-arch
dh binary-arch --parallel
   dh_testroot -a -O--parallel
   dh_prep -a -O--parallel
   dh_auto_install -a -O--parallel
make[1]: Entering directory `/build/buildd/librostlab-blast-1.0.1'
Making install in lib
make[2]: Entering directory `/build/buildd/librostlab-blast-1.0.1/lib'
make  install-am
make[3]: Entering directory `/build/buildd/librostlab-blast-1.0.1/lib'
make[4]: Entering directory `/build/buildd/librostlab-blast-1.0.1/lib'
 /bin/mkdir -p '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib'
 /bin/bash ../libtool   --mode=install /usr/bin/install -c   librostlab-blast.la '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib'
 /bin/mkdir -p '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
 /bin/mkdir -p '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
 /usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
 /usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/librostlab-blast.la
libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/librostlab-blast.a
libtool: install: chmod 644 /build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/librostlab-blast.a
libtool: install: ranlib /build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/librostlab-blast.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
make[4]: Leaving directory `/build/buildd/librostlab-blast-1.0.1/lib'
make[3]: Leaving directory `/build/buildd/librostlab-blast-1.0.1/lib'
make[2]: Leaving directory `/build/buildd/librostlab-blast-1.0.1/lib'
make[2]: Entering directory `/build/buildd/librostlab-blast-1.0.1'
make[3]: Entering directory `/build/buildd/librostlab-blast-1.0.1'
make[3]: Nothing to be done for `install-exec-am'.
 /bin/mkdir -p '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/share/doc/librostlab-blast/examples'
 /usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/build/buildd/librostlab-blast-1.0.1/debian/tmp/usr/share/doc/librostlab-blast/examples'
make[3]: Leaving directory `/build/buildd/librostlab-blast-1.0.1'
make[2]: Leaving directory `/build/buildd/librostlab-blast-1.0.1'
make[1]: Leaving directory `/build/buildd/librostlab-blast-1.0.1'
   dh_install -a -O--parallel
dh_install: librostlab-blast0 missing files (usr/lib/librostlab-blast.so.*), aborting
make: *** [binary-arch] Error 255
dpkg-buildpackage: error: /usr/bin/fakeroot debian/rules binary-arch gave error exit status 2