[Debian-med-packaging] samtools_0.1.19-1~bpo70+1_amd64.changes ACCEPTED into wheezy-backports, wheezy-backports

Fri Apr 18 07:00:12 UTC 2014

Accepted:

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Hash: SHA512

Format: 1.8
Date: Wed, 16 Apr 2014 07:29:02 +0900
Source: samtools
Binary: samtools libbam-dev
Architecture: source amd64
Version: 0.1.19-1~bpo70+1
Distribution: wheezy-backports
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description: 
 libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format
 samtools   - processing sequence alignments in SAM and BAM formats
Closes: 544976 653042 671524
Changes: 
 samtools (0.1.19-1~bpo70+1) wheezy-backports; urgency=medium
 .
   * Backport for Wheezy.
 .
 samtools (0.1.19-1) unstable; urgency=low
 .
   cb9bd50 Imported https://github.com/samtools/samtools/archive/0.1.19.tar.gz
   1e6d442 new tools ace2sam, bamcheck, plot-bamcheck, r2plot.lua, vcfutils.lua.
   2f2d5c5 debian/copyright: collapsed copyright notices from main holders.
   e194f9e Removed fix_float_tag.patch, corrected upstream.
   9c0e543 Refreshed patches.
   3e7e0ec Renamed no-pileup-tests.patch fix_example_makefile.patch.
   8d8550e example/Makefile: pass -lpthread when compiling calDepth.
   fc32243 harden by concatenating Debian's LDFLAGS and CPPFLAGS in CFLAGS.
   6f75b48 debian/control: normalised with cme.
   e13bb5e debian/control: normalised VCS URLs.
   a1b1b00 debian/control: deleted DM-Upload-Allowed field.
   ddcd54e Use NEWS as upstream changelog.
   81ad760 Conforms to Policy version 3.9.4.
 .
 samtools (0.1.18-4) unstable; urgency=low
 .
   [Charles Plessy]
   * debian/copyright: Normalised with config-model
   * added bash completion
   * Build-depend on Debhelper 9
   * Pass build flaggs set by dpkg-buildflags via Debhelper
   * Moved DOI and PubMed to the Reference namespace
   * Do not compress the example binary alignment file
   * Mention ‘SAMtools’ in libbam-dev's description
 .
   [Andreas Tille]
   * debian/upstream: replaced BibTeX entry
 .
   [Dominique Belhachemi]
   * added patch to fix float tag bug (upstream bug 71)
 .
 samtools (0.1.18-3) unstable; urgency=low
 .
   * upload 0.1.18-2 closed the wrong bug, correction:
   * added patch to fix segfault in mpileup (Closes: #653042)
   * added patch to fix coverage cap (Closes: #671524)
 .
 samtools (0.1.18-2) unstable; urgency=low
 .
   * added patch to fix segfault in mpileup (Closes: #544976)
   * added patch to fix coverage cap (Closes: #671524)
 .
 samtools (0.1.18-1) unstable; urgency=low
 .
   [b990d9d3] New upstream release.
   [d59366b9] Updated copyright statements.
   [aa08abe5] Compress binary packages with xz.
   [9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
Checksums-Sha1: 
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 653cd074ca7302ab3d105837ca96068fa3cc6e04 562434 samtools_0.1.19-1~bpo70+1_amd64.deb
 f2ff6a6024af331ff2a7a90d0d24625b04b64c96 122934 libbam-dev_0.1.19-1~bpo70+1_amd64.deb
Checksums-Sha256: 
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Files: 
 fe2effe3a0571ee5a3c889fe105a0d09 2093 science optional samtools_0.1.19-1~bpo70+1.dsc
 5a1a3d7038fd3add3708988ac83865c6 10010 science optional samtools_0.1.19-1~bpo70+1.debian.tar.gz
 e93e3ff912789fd1b7f3f08d55286107 562434 science optional samtools_0.1.19-1~bpo70+1_amd64.deb
 89895784d92a514241130f48e754a89d 122934 libdevel optional libbam-dev_0.1.19-1~bpo70+1_amd64.deb

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