[Debian-med-packaging] Bug#757589: elastix: FTFBFS against insighttoolkit 4.6
Sebastian Ramacher
sramacher at debian.org
Sat Aug 9 15:44:33 UTC 2014
Source: elastix
Version: 4.7-2
Severity: serious
Justification: fails to build from source (but built successfully in the past)
elastix fails to build against insighttoolkit 4.6:
| cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedRecursivePyramid && /usr/lib/ccache/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/tmp/buildd/insighttoolkit4-4.6.0/BUILD/Modules/ThirdParty/HDF5/src -I/usr/include/dcmtk -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/gdcm-2.4 -I/usr/include/ITK-4.6 -I/«PKGBUILDDIR»/src/Common -I/«PKGBUILDDIR»/src/Common/CostFunctions -I/«PKGBUILDDIR»/src/Common/CUDA -I/«PKGBUILDDIR»/src/Common/ImageSamplers -I/«PKGBUILDDIR»/src/Common/KNN -I/«PKGBUILDDIR»/src/Common/KNN/ann_1.1/include -I/«PKGBUILDDIR»/src/Common/LineSearchOptimizers -I/«PKGBUILDDIR»/src/Common/ParameterFileParser -I/«PKGBUILDDIR»/src/Common/Transforms -I/«PKGBUILDDIR»/src/Common/xout -I/«PKGBUILDDIR»/src/Common/MevisDicomTiff -I/«PKGBUILDDIR»/src/Core -I/«PKGBUILDDIR»/src/Core/Install -I/«PKGBUILDDIR»/src/Core/Kernel -I/«PKGBUILDDIR»/src/Core/ComponentBaseClasses -I/«PKGBUILDDIR»/src/Core/Configuration -I/«PKGBUILDDIR»/src/Core/Main -I/«PKGBUILDDIR»/src/Components/FixedImagePyramids -I/«PKGBUILDDIR»/src/Components/ImageSamplers -I/«PKGBUILDDIR»/src/Components/Interpolators -I/«PKGBUILDDIR»/src/Components/Metrics -I/«PKGBUILDDIR»/src/Components/MovingImagePyramids -I/«PKGBUILDDIR»/src/Components/Optimizers -I/«PKGBUILDDIR»/src/Components/Registrations -I/«PKGBUILDDIR»/src/Components/ResampleInterpolators -I/«PKGBUILDDIR»/src/Components/Resamplers -I/«PKGBUILDDIR»/src/Components/Transforms -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -o CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o -c /«PKGBUILDDIR»/src/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx
| In file included from /«PKGBUILDDIR»/src/Core/ComponentBaseClasses/elxTransformBase.h:341:0,
| from /«PKGBUILDDIR»/src/Core/Kernel/elxElastixTemplate.h:35,
| from /«PKGBUILDDIR»/src/Core/Install/elxIncludes.h:35,
| from /«PKGBUILDDIR»/src/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:17,
| from /«PKGBUILDDIR»/src/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:15:
| /«PKGBUILDDIR»/src/Core/ComponentBaseClasses/elxTransformBase.hxx:25:51: fatal error: itkTransformToDisplacementFieldSource.h: No such file or directory
| #include "itkTransformToDisplacementFieldSource.h"
| ^
| compilation terminated.
| make[3]: *** [Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o] Error 1
Full build log is available at
https://people.debian.org/~sramacher/logs/itk4/elastix_4.7-2_amd64-20140809-1726.log.
Please take a look.
Cheers
--
Sebastian Ramacher
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