[Debian-med-packaging] Bug#757712: r-bioc-genomicranges: Fail of tests in debci (autopkgtest)

[Lucas Kanashiro]

Package: r-bioc-genomicranges
Version: 1.16.3
Severity: normal
Tags: patch
User: autopkgtest-devel at lists.alioth.debian.org
Usertags: autopkgtest


Dear Maintainer,

The tests are failing in debci because it is missing dependency. Below
the autopkgtest's log:

Loading required package: IRanges
Loading required package: GenomeInfoDb
> GenomicRanges:::.test()
Note: method with signature 'GRangesList#Vector' chosen for function
'countOverlaps',
 target signature 'GRangesList#GIntervalTree'.
 "Vector#GenomicRanges" would also be valid
Warning messages:
1: In .Seqinfo.mergexy(x, y) :
  Each of the 2 combined objects has sequence levels not in the other:
  - in 'x': chr1, chr2
  - in 'y': chr4
  Make sure to always combine/compare objects based on the same
reference
  genome (use suppressWarnings() to suppress this warning).
2: In .Seqinfo.mergexy(x, y) :
  Each of the 2 combined objects has sequence levels not in the other:
  - in 'x': chr1, chr2
  - in 'y': chr4
  Make sure to always combine/compare objects based on the same
reference
  genome (use suppressWarnings() to suppress this warning).
Error in library(digest) : there is no package called 'digest'


This is occurring because is missing the r-cran-digest dependency, to 
correct the suit test I only added this dependency in debian/tests/control.

Thanks for consider it!


-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.14-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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