[Debian-med-packaging] Bug#759415: r-bioc-genomeinfodb: Fail of tests in debci (autopkgtest)

Lucas Kanashiro kanashiro.duarte at gmail.com
Wed Aug 27 04:20:40 UTC 2014


Package: r-bioc-genomeinfodb
Version: 1.0.2
Severity: normal
Tags: patch
User: autopkgtest-devel at lists.alioth.debian.org
Usertags: autopkgtest

Dear Maintainer,

The tests are failing in debci using autopkgtest. Below the
autopkgtest's log:


adt-run [01:10:39]: test run-unit-test: [-----------------------

R version 3.1.1 (2014-07-10) -- "Sock it to Me"
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Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
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Type 'demo()' for some demos, 'help()' for on-line help, or
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> BiocGenerics:::testPackage("GenomeInfoDb")
Error in loadNamespace(name) : there is no package called 'BiocGenerics'
Calls: ::: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
adt-run [01:10:39]: test run-unit-test: -----------------------]


This occurred because it have some missing dependencies. I added the
package's dependencies, r-bioc-biocgenerics and r-cran-runit, with this
changes all the tests are passing.

Thanks for consider it!


-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.14-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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