[Debian-med-packaging] Bug#759416: r-cran-epi: Fail of tests in debci (autopkgtest)

Lucas Kanashiro kanashiro.duarte at gmail.com
Wed Aug 27 04:33:49 UTC 2014


Package: r-cran-epi
Version: 1.1.67
Severity: normal
Tags: patch
User: autopkgtest-devel at lists.alioth.debian.org
Usertags: autopkgtest

Dear Maintainer,

The tests are failing in debci using autopkgtest. Below a piece of
autopkgtest's log:


> library(survival)
Error in library(survival) : there is no package called ‘survival’
Calls: source -> withVisible -> eval -> eval -> library
In addition: Warning messages:
1: In Lexis(entry = list(Per = dodm, Age = dodm - dobth, DMdur = 0),  :
  Dropping 4 rows with duration of follow up < tol

2: In formatC(Beg, format = "f", digits = 0, big.mark = ",") :
  class of 'x' was discarded
3: In formatC(End, format = "f", digits = 0, big.mark = ",") :
  class of 'x' was discarded
Execution halted
adt-run [01:28:09]: test run-unit-test: -----------------------]


The test suite is missing one dependency called r-cran-survival, after
add this dependency everything works well.

Thanks for consider it!


-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.14-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
-------------- next part --------------
A non-text attachment was scrubbed...
Name: r-cran-epi.patch
Type: text/x-diff
Size: 363 bytes
Desc: not available
URL: <http://lists.alioth.debian.org/pipermail/debian-med-packaging/attachments/20140827/6c27c327/attachment.patch>


More information about the Debian-med-packaging mailing list