[Debian-med-packaging] [HELP] Can anybody try to upload libsbml (Was: Bug#735453: Changes to libsbml)

[Thorsten Alteholz]

On Wed, 27 Aug 2014, Andreas Tille wrote:
> and than build the package and upload.  Please be prepared for a long
> download and build run.  I have no idea why this does not work for me
> but for Ivo but we somehow need to get this issue from our todo list.

does not work here:

make[4]: Entering directory 
'/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build'
Scanning dependencies of target binding_perl_lib
make[4]: Leaving directory 
'/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build'
make[4]: Entering directory 
'/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build'
[ 99%] Building CXX object 
src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o
In file included from 
/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build/src/bindings/perl/LibSBML.cpp:9:0:
/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build/src/bindings/perl/LibSBML_wrap.cpp: 
In function 'int SWIG_AsVal_unsigned_SS_long(SV*, long unsigned int*)':
/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build/src/bindings/perl/LibSBML_wrap.cpp:1942:21: 
warning: comparison between signed and unsigned integer expressions 
[-Wsign-compare]
      if (v >= 0 && v <= ULONG_MAX) {
                      ^
In file included from 
/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build/src/bindings/perl/LibSBML_wrap.cpp:745:0,
                  from 
/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build/src/bindings/perl/LibSBML.cpp:9:
/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build/src/bindings/perl/LibSBML_wrap.cpp: 
In function 'void boot_LibSBML(PerlInterpreter*, CV*)':
/usr/lib/x86_64-linux-gnu/perl/5.20/CORE/XSUB.h:164:20: warning: unused 
variable 'items' [-Wunused-variable]
  #define dITEMS I32 items = (I32)(SP - MARK)
                     ^
/usr/lib/x86_64-linux-gnu/perl/5.20/CORE/XSUB.h:172:16: note: in expansion 
of macro 'dITEMS'
   dSP; dAXMARK; dITEMS
                 ^
/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build/src/bindings/perl/LibSBML_wrap.cpp:301740:3: 
note: in expansion of macro 'dXSARGS'
    dXSARGS;
    ^
g++-4.9.real: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-4.9/README.Bugs> for instructions.
src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make:152: recipe 
for target 
'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o' failed
make[4]: *** 
[src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o] Error 4
make[4]: Leaving directory 
'/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build'
CMakeFiles/Makefile2:527: recipe for target 
'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/all' failed
make[3]: *** [src/bindings/perl/CMakeFiles/binding_perl_lib.dir/all] Error 
2
make[3]: Leaving directory 
'/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build'
Makefile:133: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory 
'/home/debian/tmp/build-area/libsbml-5.10.0+dfsg/build'
debian/rules:54: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory 
'/home/debian/tmp/build-area/libsbml-5.10.0+dfsg'
debian/rules:26: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2


   Thorsten