[Debian-med-packaging] Bug#768730: Bug#768730: python-mne REMOVED from testing

Yaroslav Halchenko debian at onerussian.com
Thu Dec 11 14:56:31 UTC 2014


On Wed, 10 Dec 2014, Alexandre Gramfort wrote:

> hi,

> thanks Yarik for your help make v0.8.6 available on neurodebian.

> Regarding the patch I sent it via email as I don't know the procedure.
> Currently the master branch is packaged and it's already at 0.8.6.
> I am not sure if I should branch at old version, commit the patch,
> and push in maint/0.8.4 branch or something.

ok -- god blessing from release team for uploading patched 0.8.6

got stuck now though since with sid's version of pandas (never migrated
to jessie since some builds were failing... yeah... busy busy) mne build
was failing:

======================================================================
ERROR: Test stc Pandas exporter
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/yoh/deb/gits/pkg-exppsy/build-area/python-mne-0.8.6+dfsg/mne/utils.py", line 669, in dec
    ret = function(*args, **kwargs)
  File "/home/yoh/deb/gits/pkg-exppsy/build-area/python-mne-0.8.6+dfsg/mne/tests/test_source_estimate.py", line 588, in test_as_data_frame
    df.reset_index().columns[:3] == ['subject', 'time']
  File "/usr/lib/python2.7/dist-packages/pandas/core/index.py", line 57, in wrapper
    if com.is_bool_dtype(result):
  File "/usr/lib/python2.7/dist-packages/pandas/core/common.py", line 2465, in is_bool_dtype
    tipo = _get_dtype_type(arr_or_dtype)
  File "/usr/lib/python2.7/dist-packages/pandas/core/common.py", line 2394, in _get_dtype_type
    return arr_or_dtype.dtype.type
AttributeError: 'NotImplementedType' object has no attribute 'dtype'

which smells like pandas issue.  I am building their fresh release 0.15.2 -- if
that one addresses it -- we are set, will upload that one and then patched mne,
and will request unblock... if not fixed -- I would need to troubleshoot/get it
fixed, and then upload pandas.  summary: I want to upload mne only when I
know there is no FTBFS in sid or jessie (so far that one is cool)

-- 
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist,            Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        



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