[Debian-med-packaging] Bug#737327: ITP: dnaclust -- tool for clustering millions of short DNA sequences
Andreas Tille
tille at debian.org
Sat Feb 1 18:42:44 UTC 2014
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : dnaclust
Version : 3
Upstream Author : Mohammadreza Ghodsi <ghodsi at cs.umd.edu>
* URL : http://dnaclust.sourceforge.net/
* License : GPL3+
Programming Lang: C++
Description : tool for clustering millions of short DNA sequences
dnaclust is a tool for clustering large number of short DNA sequences.
The clusters are created in such a way that the "radius" of each
clusters is no more than the specified threshold.
.
The input sequences to be clustered should be in Fasta format. The id
of each sequence is based on the first word of the seqeunce in the Fasta
format. The first word is the prefix of the header up to the first
occurance of white space characters in the header.
This package is maintained by the Debian Med team and was packaged as a
demonstration in the Debian Med workshop at request of Tim.
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