[Debian-med-packaging] Bug#739509: ITP: gasic -- genome abundance similarity correction
Andreas Tille
tille at debian.org
Wed Feb 19 14:59:30 UTC 2014
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : gasic
Version : 0.0.r18
Upstream Author : Martin S. Lindner <LindnerM at rki.de>
* URL : http://sourceforge.net/projects/gasic/files/
* License : BSD
Programming Lang: Python
Description : genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative
taxonomic assessment of microbial community compositions. However, the
majority of approaches either quantify at low resolution (e.g. at phylum
level) or have severe problems discerning highly similar species. Yet,
accurate quantification on species level is desirable in applications
such as metagenomic diagnostics or community comparison. GASiC is a
method to correct read alignment results for the ambiguities imposed by
similarities of genomes. It has superior performance over existing
methods.
This package is maintained by the Debian Med team and the packaging
is available at
git://anonscm.debian.org/debian-med/gasic.git
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