[Debian-med-packaging] Bug#733398: Bug#733352: Bowtie and tophat fail to build with seqan >= 1.4

[Ognyan Kulev]

На 25.2.2014 г. 15:30 ч., Andreas Tille написа:
> since we uploaded seqan 1.4.x packages to Debian the packages bowtie and
> tophat failed to build while the build went fine with seqan 1.3.

> Please also let us know if you have no idea how to fix this.  In this
> case we would use a last fallback and reinject a versioned seqan1.3
> package in addition to the latest version of seqan.

bowtie package uses seqan 1.2 and I made series of patches to build it 
against seqan 1.3 
<http://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/debian/patches/>. 
This weekend I'll work on patching bowtie to work with 1.4.

Best regards,
Ognyan Kulev