[Debian-med-packaging] Bug#735546: autopkgtest fails on missing runit, stderr, and test failures

[Martin Pitt]

Package: r-bioc-iranges
Version: 1.20.6-1
Tags: patch
User: ubuntu-devel at lists.ubuntu.com
Usertags: origin-ubuntu ubuntu-patch trusty

Hello,

r-bioc-iranges's autopkgtest currently fails [1]:

Error in BiocGenerics:::testPackage("IRanges") : RUnit package not found

After adding it (r-cran-runit), it fails because the test produces a
lot of stderror.  Attached debdiff fixes these two, but now the test
encounters some actual failures:

Error in .CompressedIRangesList.range(x) : 
  the XVector package is required by the "range" method for CompressedIRangesList objects

(it repeats that a few times).

Attached debdiff fixes all these issues, the autopkgtest succeeds now.

Thanks for considering,

Martin

[1] https://jenkins.qa.ubuntu.com/job/trusty-adt-r-bioc-iranges/8/ARCH=i386,label=adt/console
-- 
Martin Pitt                        | http://www.piware.de
Ubuntu Developer (www.ubuntu.com)  | Debian Developer  (www.debian.org)
-------------- next part --------------
diff -Nru r-bioc-iranges-1.20.6/debian/changelog r-bioc-iranges-1.20.6/debian/changelog
--- r-bioc-iranges-1.20.6/debian/changelog	2013-12-03 11:42:42.000000000 +0100
+++ r-bioc-iranges-1.20.6/debian/changelog	2014-01-16 12:21:24.000000000 +0100
@@ -1,3 +1,10 @@
+r-bioc-iranges (1.20.6-1ubuntu1) trusty; urgency=medium
+
+  * debian/tests/control: Add missing r-cran-runit and r-bioc-xvector test
+    dependencies, and allow stderr output.  
+
+ -- Martin Pitt <martin.pitt at ubuntu.com>  Thu, 16 Jan 2014 12:11:17 +0100
+
 r-bioc-iranges (1.20.6-1) unstable; urgency=low
 
   * New upstream version
diff -Nru r-bioc-iranges-1.20.6/debian/tests/control r-bioc-iranges-1.20.6/debian/tests/control
--- r-bioc-iranges-1.20.6/debian/tests/control	2013-11-05 09:42:06.000000000 +0100
+++ r-bioc-iranges-1.20.6/debian/tests/control	2014-01-16 12:16:28.000000000 +0100
@@ -1 +1,3 @@
 Tests: run-unit-test
+Depends: @, r-cran-runit, r-bioc-xvector
+Restrictions: allow-stderr
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