[Debian-med-packaging] Bug#736407: staden-io-lib: FTBFS on non-x86 architectures

[Andreas Beckmann]

Package: staden-io-lib
Version: 1.13.3-2
Severity: serious
Justification: fails to build from source

Hi,

staden-io-lib only built successfully on i386-any and amd64-any, all
other architectures fail two tests.

https://buildd.debian.org/status/package.php?p=staden-io-lib

excerpts from
https://buildd.debian.org/status/fetch.php?pkg=staden-io-lib&arch=armel&ver=1.13.3-2&stamp=1386918549

=== testing xx#minimal.sam ===
 ../progs/scramble  ./data/xx#minimal.sam test.out/xx#minimal.bam
 ../progs/scramble  -r ./data/xx.fa test.out/xx#minimal.bam test.out/xx#minimal.full.cram
 ../progs/scramble  test.out/xx#minimal.bam > test.out/tmp.sam
 ../progs/scramble  test.out/xx#minimal.full.cram > test.out/xx#minimal.full.sam
 ../progs/scramble  -O bam test.out/xx#minimal.full.cram > test.out/xx#minimal.full.bam
 ../progs/scramble  test.out/xx#minimal.full.bam test.out/tmp.sam
cmp test.out/xx#minimal.full.sam test.out/xx#minimal.full.bam.sam
cmp: EOF on test.out/xx#minimal.full.bam.sam
FAIL: scram.test

=== testing xx#minimal.sam ===
 ../progs/scramble -t4 ./data/xx#minimal.sam test.out/xx#minimal.bam
Total time=0.006963
Wait  time=0.005436
21% utilisation
 ../progs/scramble -t4 -r ./data/xx.fa test.out/xx#minimal.bam test.out/xx#minimal.full.cram
Total time=0.533627
Wait  time=0.519598
2% utilisation
 ../progs/scramble -t4 test.out/xx#minimal.bam > test.out/tmp.sam
Total time=0.003455
Wait  time=0.003131
8% utilisation
 ../progs/scramble -t4 test.out/xx#minimal.full.cram > test.out/xx#minimal.full.sam
Total time=0.316887
Wait  time=0.315883
0% utilisation
 ../progs/scramble -t4 -O bam test.out/xx#minimal.full.cram > test.out/xx#minimal.full.bam
Total time=0.337957
Wait  time=0.334906
0% utilisation
 ../progs/scramble -t4 test.out/xx#minimal.full.bam test.out/tmp.sam
Total time=0.003520
Wait  time=0.003224
7% utilisation
cmp test.out/xx#minimal.full.sam test.out/xx#minimal.full.bam.sam
cmp: EOF on test.out/xx#minimal.full.bam.sam
FAIL: scram_mt.test
make[3]: *** [check-TESTS] Error 1
===================
2 of 7 tests failed
===================

Andreas