[Debian-med-packaging] Bug#733352: help needed to build tophat with seqan >=1.4

[Alexander Mestiashvili]

Dear SeqAn Developers,

We distribute SeqAn in Debian and recently packaged SeqAn version 1.4.
However after switching to the new version tophat [0] fails to build.
Here are the build errors which we couldn't solve:

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=733352#45

It would be really great if you would give us a hint.

Debianized tophat lives here:
http://anonscm.debian.org/gitweb/?p=debian-med/tophat.git

Thank you,
Alex

[0] http://ccb.jhu.edu/software/tophat/index.shtml