[Debian-med-packaging] Help needed to build BSgenome

[Andreas Tille]

Hi,

as you might know the Debian Med team is creating Debian packages from
selected BioConductor modules.  When trying to update BSgenome I
stumbled about a problem I have no clue how to solve.

...
* installing *source* package 'BSgenome' ...
** R
** inst
** preparing package for lazy loading
Error : objects 'GAlignments', 'GAlignmentPairs', 'Union', 'IntersectionNotEmpty', 'IntersectionStrict', 'findSpliceOverlaps' are not exported by 'namespace:GenomicRanges'
ERROR: lazy loading failed for package 'BSgenome'
* removing '/tmp/buildd/r-bioc-bsgenome-1.32.0/debian/r-bioc-bsgenome/usr/lib/R/site-library/BSgenome'


Since I upgraded GenomicRanges before to version 1.16.3 the requirement
GenomicRanges(>= 1.15.9) mentioned on the BSgenome web page is
fullfilled.

>From the names of the first two objects it seems like it could be a
dependency of GenomicAlignments.  However, I can not build
GenomicAlignments without having BSgenome installed.

Any idea what might went wrong here?

Kind regards

       Andreas.

-- 
http://fam-tille.de