[Debian-med-packaging] Bug#750906: gentle: Please update to use wxwidgets3.0
Andreas Tille
andreas at an3as.eu
Wed Jun 25 12:09:29 UTC 2014
Hi Olly,
thanks for your effort to move to wxwidgets 3.0 and the provided patch.
I injected it into gentle SVN
svn+ssh://svn.debian.org/svn/debian-med/trunk/packages/gentle/trunk/
but I realised that it does not apply cleanly. Could you please verify
that `quilt push -a` applies to the source code since I personally do
not have any idea how to do the wx migration.
Thanks a lot
Andreas.
On Sun, Jun 08, 2014 at 10:17:36PM +1200, Olly Betts wrote:
> Package: gentle
> Version: 1.9+cvs20100605+dfsg1-2
> Severity: important
> Tags: patch sid jessie
> User: freewx-maint at lists.alioth.debian.org
> Usertags: wx3.0
> Control: block 748169 by -1
>
> Dear maintainer,
>
> We're aiming to migrate the archive to using wxwidgets3.0 instead of
> wxwidgets2.8, and intend to drop wxwidgets2.8 before jessie is released.
>
> I've rebuilt your package using the attached patch. I haven't tried
> to run it though - a specialist package like this is much better tested
> by someone who actually uses it (I don't have any suitable data, and
> I'd have little idea what to do with it even if I did!)
>
> I'm happy to NMU this change if you wish me to - just let me know.
>
> Cheers,
> Olly
> diff -Nru gentle-1.9+cvs20100605+dfsg1/debian/changelog gentle-1.9+cvs20100605+dfsg1/debian/changelog
> --- gentle-1.9+cvs20100605+dfsg1/debian/changelog 2013-10-16 21:11:11.000000000 +1300
> +++ gentle-1.9+cvs20100605+dfsg1/debian/changelog 2014-06-08 18:41:02.000000000 +1200
> @@ -1,3 +1,12 @@
> +gentle (1.9+cvs20100605+dfsg1-2.1) unstable; urgency=medium
> +
> + * Non-maintainer upload.
> + * Update to use wxWidgets 3.0 (new patch wx3.0-compat.patch).
> + * Fix mismatching format codes in printf and scanf (new patch
> + fix-format-codes.patch).
> +
> + -- Olly Betts <olly at survex.com> Sun, 08 Jun 2014 18:40:54 +1200
> +
> gentle (1.9+cvs20100605+dfsg1-2) unstable; urgency=low
>
> * debian/control:
> diff -Nru gentle-1.9+cvs20100605+dfsg1/debian/control gentle-1.9+cvs20100605+dfsg1/debian/control
> --- gentle-1.9+cvs20100605+dfsg1/debian/control 2013-10-16 19:48:43.000000000 +1300
> +++ gentle-1.9+cvs20100605+dfsg1/debian/control 2014-03-19 02:39:29.000000000 +1300
> @@ -6,7 +6,7 @@
> Priority: optional
> Build-Depends: debhelper (>= 9),
> autotools-dev,
> - libwxgtk2.8-dev,
> + libwxgtk3.0-dev,
> libtinyxml-dev,
> libmysqlclient-dev,
> libsqlite3-dev,
> diff -Nru gentle-1.9+cvs20100605+dfsg1/debian/patches/fix-format-codes.patch gentle-1.9+cvs20100605+dfsg1/debian/patches/fix-format-codes.patch
> --- gentle-1.9+cvs20100605+dfsg1/debian/patches/fix-format-codes.patch 1970-01-01 12:00:00.000000000 +1200
> +++ gentle-1.9+cvs20100605+dfsg1/debian/patches/fix-format-codes.patch 2014-06-08 18:39:55.000000000 +1200
> @@ -0,0 +1,159 @@
> +Description: Fix printf and scanf format codes to match the types actually passed
> +Author: Olly Betts <olly at survex.com>
> +Last-Update: 2014-06-08
> +
> +--- a/ureadseq.c
> ++++ b/ureadseq.c
> +@@ -1344,7 +1344,7 @@
> + for (i=0; i < *skiplines; i++) ReadOneLine(sp);
> + nlines= 0;
> + ReadOneLine(sp);
> +- sscanf( sp, "%d%d", &nspp, &nlen);
> ++ sscanf( sp, "%ld%ld", &nspp, &nlen);
> + ReadOneLine(sp); /* 1st seq line */
> + for (ps= sp+10, ilen=0; *ps!=0; ps++) if (isprint(*ps)) ilen++;
> +
> +@@ -1590,7 +1590,7 @@
> + seqname[l] = 0;
> +
> + sscanf( seqname, "%30s", idword);
> +- sprintf(numform, "%d", seqlen);
> ++ sprintf(numform, "%ld", seqlen);
> + numwidth= strlen(numform)+1;
> + nameform[0]= '\0';
> +
> +@@ -1619,8 +1619,8 @@
> +
> + case kOlsen: /* Olsen seq. editor takes plain nucs OR Genbank */
> + case kGenBank:
> +- fprintf(outf,"LOCUS %s %d bp\n", idword, seqlen);
> +- fprintf(outf,"DEFINITION %s, %d bases, %X checksum.\n", seqname, seqlen, checksum);
> ++ fprintf(outf,"LOCUS %s %ld bp\n", idword, seqlen);
> ++ fprintf(outf,"DEFINITION %s, %ld bases, %lX checksum.\n", seqname, seqlen, checksum);
> + /* fprintf(outf,"ACCESSION %s\n", accnum); */
> + fprintf(outf,"ORIGIN \n");
> + spacer = 11;
> +@@ -1634,7 +1634,7 @@
> + /* somewhat like genbank... \\\*/
> + /* fprintf(outf,"\\\\\\\n"); << only at top of file, not each entry... */
> + fprintf(outf,"ENTRY %s \n", idword);
> +- fprintf(outf,"TITLE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum);
> ++ fprintf(outf,"TITLE %s, %ld bases, %lX checksum.\n", seqname, seqlen, checksum);
> + /* fprintf(outf,"ACCESSION %s\n", accnum); */
> + fprintf(outf,"SEQUENCE \n");
> + numwidth = 7;
> +@@ -1644,7 +1644,7 @@
> + strcpy(endstr, "\n///");
> + /* run a top number line for PIR */
> + for (j=0; j<numwidth; j++) fputc(' ',outf);
> +- for (j= 5; j<=width; j += 5) fprintf(outf,"%10d",j);
> ++ for (j= 5; j<=width; j += 5) fprintf(outf,"%10ld",j);
> + fputc('\n',outf);
> + linesout += 5;
> + break;
> +@@ -1654,7 +1654,7 @@
> + fprintf(outf,">P1;%s\n", idword);
> + else
> + fprintf(outf,">DL;%s\n", idword);
> +- fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum);
> ++ fprintf(outf,"%s, %ld bases, %lX checksum.\n", seqname, seqlen, checksum);
> + spacer = 11;
> + strcpy(endstr,"*\n");
> + linesout += 3;
> +@@ -1663,8 +1663,8 @@
> + case kEMBL:
> + fprintf(outf,"ID %s\n", idword);
> + /* fprintf(outf,"AC %s\n", accnum); */
> +- fprintf(outf,"DE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum);
> +- fprintf(outf,"SQ %d BP\n", seqlen);
> ++ fprintf(outf,"DE %s, %ld bases, %lX checksum.\n", seqname, seqlen, checksum);
> ++ fprintf(outf,"SQ %ld BP\n", seqlen);
> + strcpy(endstr, "\n//"); /* 11Oct90: bug fix*/
> + tab = 4; /** added 31jan91 */
> + spacer = 11; /** added 31jan91 */
> +@@ -1675,7 +1675,7 @@
> + case kGCG:
> + fprintf(outf,"%s\n", seqname);
> + /* fprintf(outf,"ACCESSION %s\n", accnum); */
> +- fprintf(outf," %s Length: %d (today) Check: %d ..\n", idword, seqlen, checksum);
> ++ fprintf(outf," %s Length: %ld (today) Check: %lX ..\n", idword, seqlen, checksum);
> + spacer = 11;
> + numleft = true;
> + strcpy(endstr, "\n"); /* this is insurance to help prevent misreads at eof */
> +@@ -1684,13 +1684,13 @@
> +
> + case kStrider: /* ?? map ?*/
> + fprintf(outf,"; ### from DNA Strider ;-)\n");
> +- fprintf(outf,"; DNA sequence %s, %d bases, %X checksum.\n;\n", seqname, seqlen, checksum);
> ++ fprintf(outf,"; DNA sequence %s, %ld bases, %lX checksum.\n;\n", seqname, seqlen, checksum);
> + strcpy(endstr, "\n//");
> + linesout += 3;
> + break;
> +
> + case kFitch:
> +- fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum);
> ++ fprintf(outf,"%s, %ld bases, %lX checksum.\n", seqname, seqlen, checksum);
> + spacer = 4;
> + width = 60;
> + linesout += 1;
> +@@ -1721,7 +1721,7 @@
> + fprintf(outf," id { local id %d },\n", gPretty.atseq);
> + fprintf(outf," descr { title \"%s\" },\n", seqid);
> + fprintf(outf," inst {\n");
> +- fprintf(outf," repr raw, mol %s, length %d, topology linear,\n", cp, seqlen);
> ++ fprintf(outf," repr raw, mol %s, length %ld, topology linear,\n", cp, seqlen);
> + fprintf(outf," seq-data\n");
> + if (seqtype == kAmino)
> + fprintf(outf," iupacaa \"");
> +@@ -1743,7 +1743,7 @@
> + tab = 0; /* 1; */
> + /* strcpy(endstr,";\nend;"); << this is end of all seqs.. */
> + /* do a header comment line for paup */
> +- fprintf(outf,"[Name: %-16s Len:%6d Check: %8X]\n", idword, seqlen, checksum);
> ++ fprintf(outf,"[Name: %-16s Len:%6ld Check: %8lX]\n", idword, seqlen, checksum);
> + linesout += 1;
> + break;
> +
> +@@ -1760,13 +1760,13 @@
> + tab = gPretty.tab;
> + /* also add rtf formatting w/ font, size, style */
> + if (gPretty.nametop) {
> +- fprintf(outf,"Name: %-16s Len:%6d Check: %8X\n", idword, seqlen, checksum);
> ++ fprintf(outf,"Name: %-16s Len:%6ld Check: %8lX\n", idword, seqlen, checksum);
> + linesout++;
> + }
> + break;
> +
> + case kMSF:
> +- fprintf(outf," Name: %-16s Len:%6d Check: %5d Weight: 1.00\n",
> ++ fprintf(outf," Name: %-16s Len:%6ld Check: %5ld Weight: 1.00\n",
> + idword, seqlen, checksum);
> + linesout++;
> + nameleft= true;
> +@@ -1778,7 +1778,7 @@
> + break;
> +
> + case kIG:
> +- fprintf(outf,";%s, %d bases, %X checksum.\n", seqname, seqlen, checksum);
> ++ fprintf(outf,";%s, %ld bases, %lX checksum.\n", seqname, seqlen, checksum);
> + fprintf(outf,"%s\n", idword);
> + strcpy(endstr,"1"); /* == linear dna */
> + linesout += 2;
> +@@ -1787,7 +1787,7 @@
> + default :
> + case kZuker: /* don't attempt Zuker's ftn format */
> + case kPearson:
> +- fprintf(outf,">%s, %d bases, %X checksum.\n", seqname, seqlen, checksum);
> ++ fprintf(outf,">%s, %ld bases, %lX checksum.\n", seqname, seqlen, checksum);
> + linesout += 1;
> + break;
> + }
> +@@ -1828,7 +1828,7 @@
> + s[l++] = ' ';
> + }
> + if (l1 % 10 == 1 || l1 == width) {
> +- if (numline==1) fprintf(outf,"%-9d ",i+1);
> ++ if (numline==1) fprintf(outf,"%-9ld ",i+1);
> + s[l++]= '|'; /* == put a number here */
> + }
> + else s[l++]= ' ';
> diff -Nru gentle-1.9+cvs20100605+dfsg1/debian/patches/series gentle-1.9+cvs20100605+dfsg1/debian/patches/series
> --- gentle-1.9+cvs20100605+dfsg1/debian/patches/series 2010-07-09 08:43:17.000000000 +1200
> +++ gentle-1.9+cvs20100605+dfsg1/debian/patches/series 2014-06-08 18:37:30.000000000 +1200
> @@ -1,3 +1,5 @@
> forward_slashes.patch
> remove_tinyxml.patch
> remove_clustalw.patch
> +wx3.0-compat.patch
> +fix-format-codes.patch
> diff -Nru gentle-1.9+cvs20100605+dfsg1/debian/patches/wx3.0-compat.patch gentle-1.9+cvs20100605+dfsg1/debian/patches/wx3.0-compat.patch
> --- gentle-1.9+cvs20100605+dfsg1/debian/patches/wx3.0-compat.patch 1970-01-01 12:00:00.000000000 +1200
> +++ gentle-1.9+cvs20100605+dfsg1/debian/patches/wx3.0-compat.patch 2014-06-08 18:51:16.000000000 +1200
> @@ -0,0 +1,310 @@
> +Description: Fix to work with wxWidgets 3.0
> +Author: Olly Betts <olly at survex.com>
> +Last-Update: 2014-06-08
> +
> +--- a/TClone.h
> ++++ b/TClone.h
> +@@ -68,7 +68,7 @@
> + void parseLines ( wxArrayString &v , char *t , long l ) ; ///< Breaks text into lines
> + void separateNames ( wxString &s1 , wxString &s2 ) ; ///< ???
> + int cmp ( const wxString &s1 , const wxString &s2 ) ; ///< String comparison
> +- int a2i ( wxString &s ) { return atoi ( (char*) s.c_str() ) ; } ///< Converts string to integer
> ++ int a2i ( wxString &s ) { return atoi ( (const char*) s.c_str() ) ; } ///< Converts string to integer
> +
> + wxString filename , name , sequence , description ;
> + int size ; ///< Sequence length
> +--- a/TXMLfile.cpp
> ++++ b/TXMLfile.cpp
> +@@ -221,7 +221,7 @@
> + {
> + char u[100] ;
> + sprintf ( u , "short_itemtype%d" , i.getType() ) ;
> +- i.name = wxString ( txt(u) , wxConvUTF8 ) ;
> ++ i.name = txt(u);
> + wxString d2 = i.desc ;
> + int k = d2.find ( _T("\n") ) ;
> + if ( k > -1 ) d2.erase ( k ) ;
> +--- a/TVirtualGel.cpp
> ++++ b/TVirtualGel.cpp
> +@@ -8,7 +8,6 @@
> + BEGIN_EVENT_TABLE(TVirtualGel, MyChildBase)
> + EVT_CLOSE(ChildBase::OnClose)
> + EVT_SET_FOCUS(ChildBase::OnFocus)
> +- EVT_SIZE(TVirtualGel::OnSize)
> +
> + EVT_CHOICE(VG_PERCENT,TVirtualGel::OnPercent)
> + EVT_CHOICE(VG_MARKER,TVirtualGel::OnMarker)
> +--- a/MyChild.cpp
> ++++ b/MyChild.cpp
> +@@ -1141,7 +1141,7 @@
> + {
> + MyFrame *f = myapp()->frame ; //(MyFrame*) GetParent() ;
> + TRestrictionEditor ed ( f , _T("") , wxPoint(-1,-1) , wxSize(600,400) ,
> +- wxDEFAULT_DIALOG_STYLE|wxCENTRE|wxDIALOG_MODAL);
> ++ wxDEFAULT_DIALOG_STYLE|wxCENTRE);
> + ed.pre = s ;
> + ed.cocktail = vec->cocktail ;
> + ed.remoteCocktail = &vec->cocktail ;
> +--- a/TRestrictionEditor.cpp
> ++++ b/TRestrictionEditor.cpp
> +@@ -376,7 +376,7 @@
> + wxString s = el->GetItemText ( i ) ;
> + TRestrictionEnzyme *e = myapp()->frame->LS->getRestrictionEnzyme ( s ) ;
> + TEnzymeDialog ed ( this , s , wxPoint(-1,-1) , wxSize(600,400) ,
> +- wxDEFAULT_DIALOG_STYLE|wxCENTRE|wxDIALOG_MODAL ) ;
> ++ wxDEFAULT_DIALOG_STYLE|wxCENTRE ) ;
> + ed.initme ( e , true ) ;
> + ed.ShowModal() ;
> + }
> +--- a/TVectorEditor.cpp
> ++++ b/TVectorEditor.cpp
> +@@ -400,7 +400,7 @@
> + e->setCut ( 0 ) ;
> + e->setOverlap ( 0 ) ;
> + TEnzymeDialog ed ( this , txt("t_new_protease") , wxPoint(-1,-1) , wxSize(600,400) ,
> +- wxDEFAULT_DIALOG_STYLE|wxCENTRE|wxDIALOG_MODAL ) ;
> ++ wxDEFAULT_DIALOG_STYLE|wxCENTRE ) ;
> + ed.initme ( e ) ;
> + if ( ed.ShowModal() == wxID_OK )
> + {
> +--- a/TVectorEditorEnzymes.cpp
> ++++ b/TVectorEditorEnzymes.cpp
> +@@ -116,7 +116,7 @@
> + wxString s = lb->GetString ( vi[k] ) ;
> + TRestrictionEnzyme *e = myapp()->frame->LS->getRestrictionEnzyme ( s ) ;
> + TEnzymeDialog ed ( this , s , wxPoint(-1,-1) , wxSize(600,400) ,
> +- wxDEFAULT_DIALOG_STYLE|wxCENTRE|wxDIALOG_MODAL ) ;
> ++ wxDEFAULT_DIALOG_STYLE|wxCENTRE ) ;
> + ed.initme ( e ) ;
> + if ( ed.ShowModal() == wxID_OK )
> + {
> +@@ -149,7 +149,7 @@
> + wxString s = lb->GetString ( vi[0] ) ;
> + TRestrictionEnzyme *e = myapp()->frame->LS->getRestrictionEnzyme ( s ) ;
> + TEnzymeDialog ed ( this , s , wxPoint(-1,-1) , wxSize(600,400) ,
> +- wxDEFAULT_DIALOG_STYLE|wxCENTRE|wxDIALOG_MODAL ) ;
> ++ wxDEFAULT_DIALOG_STYLE|wxCENTRE ) ;
> + ed.initme ( e ) ;
> + ed.ShowModal() ;
> + }
> +@@ -335,7 +335,7 @@
> + e->setCut ( 0 ) ;
> + e->setOverlap ( 0 ) ;
> + TEnzymeDialog ed ( this , txt("t_new_enzyme") , wxPoint(-1,-1) , wxSize(600,400) ,
> +- wxDEFAULT_DIALOG_STYLE|wxCENTRE|wxDIALOG_MODAL ) ;
> ++ wxDEFAULT_DIALOG_STYLE|wxCENTRE ) ;
> + ed.initme ( e ) ;
> + if ( ed.ShowModal() == wxID_OK )
> + {
> +--- a/AminoAcids.cpp
> ++++ b/AminoAcids.cpp
> +@@ -656,7 +656,7 @@
> + {
> + if ( curDisplay )
> + {
> +- h1->Remove ( curDisplay ) ;
> ++ h1->Detach ( curDisplay ) ;
> + delete curDisplay ;
> + }
> + curDisplay = NULL ;
> +--- a/CGview.cpp
> ++++ b/CGview.cpp
> +@@ -111,7 +111,7 @@
> +
> + void CGdialog::OnChooseJar ( wxCommandEvent &event )
> + {
> +- wxFileDialog d ( this , txt("t_cgview_choose_jar") , cgviewapp->GetLabel() , _T("") , _T("cgview.jar|cgview.jar") , wxOPEN ) ;
> ++ wxFileDialog d ( this , txt("t_cgview_choose_jar") , cgviewapp->GetLabel() , _T("") , _T("cgview.jar|cgview.jar") , wxFD_OPEN ) ;
> + if ( wxID_OK != d.ShowModal() ) return ;
> + cgviewapp->SetLabel ( d.GetPath() ) ;
> + }
> +--- a/ManageDatabase.cpp
> ++++ b/ManageDatabase.cpp
> +@@ -634,7 +634,7 @@
> + void TManageDatabaseDialog::pdOnNew ( wxCommandEvent &ev )
> + {
> + wxString wildcard = _T("GENtle database (*.db)|*.db") ;
> +- wxFileDialog d ( this , txt("t_add_new_db") , _T("") , _T("") , wildcard , wxSAVE|wxOVERWRITE_PROMPT ) ;
> ++ wxFileDialog d ( this , txt("t_add_new_db") , _T("") , _T("") , wildcard , wxFD_SAVE|wxFD_OVERWRITE_PROMPT ) ;
> + int x = d.ShowModal() ;
> + if ( x != wxID_OK ) return ;
> +
> +@@ -655,7 +655,7 @@
> + void TManageDatabaseDialog::pdOnAdd ( wxCommandEvent &ev )
> + {
> + wxString wildcard = _T("GENtle database (*.db)|*.db") ;
> +- wxFileDialog d ( this , txt("t_choose_db") , _T("") , _T("") , wildcard , wxOPEN ) ;
> ++ wxFileDialog d ( this , txt("t_choose_db") , _T("") , _T("") , wildcard , wxFD_OPEN ) ;
> + int x = d.ShowModal() ;
> + if ( x != wxID_OK ) return ;
> +
> +@@ -965,7 +965,7 @@
> + TVectorItem i ;
> + i.name = sr[a][sr["di_name"]] ;
> + i.desc = sr[a][sr["di_description"]] ;
> +- i.setType ( sr[a][sr["di_type"]].GetChar(0) ) ;
> ++ i.setType ( (char)sr[a][sr["di_type"]].GetChar(0) ) ;
> + i.from = atoi ( sr[a][sr["di_from"]].mb_str() ) ;
> + i.to = atoi ( sr[a][sr["di_to"]].mb_str() ) ;
> + i.setDirection ( atoi ( sr[a][sr["di_direction"]].mb_str() ) ) ;
> +--- a/MyFrame.cpp
> ++++ b/MyFrame.cpp
> +@@ -727,7 +727,7 @@
> + name.Replace ( _T("\\") , _T("_") , TRUE ) ;
> +
> + wxString lastdir = LS->getOption ( _T("LAST_IMPORT_DIR") , _T("C:") ) ;
> +- wxFileDialog d ( this , txt("t_save_image") , lastdir , name , wildcard , wxSAVE|wxOVERWRITE_PROMPT ) ;
> ++ wxFileDialog d ( this , txt("t_save_image") , lastdir , name , wildcard , wxFD_SAVE|wxFD_OVERWRITE_PROMPT ) ;
> + if ( d.ShowModal() != wxID_OK ) return ;
> + wxString filename = d.GetPath() ;
> +
> +@@ -764,7 +764,7 @@
> + _T("|") + wcCM5format ;
> + wxString lastdir = LS->getOption ( _T("LAST_IMPORT_DIR") , _T("C:") ) ;
> + wxFileDialog d ( this , txt("import_file") , lastdir ,
> +- _T("") , wildcard , wxOPEN | wxMULTIPLE ) ;
> ++ _T("") , wildcard , wxFD_OPEN | wxFD_MULTIPLE ) ;
> + int x = d.ShowModal() ;
> + if ( x != wxID_OK ) return ;
> +
> +@@ -2616,8 +2616,8 @@
> + if ( r == 10 ) { ev.m_keyCode = WXK_LEFT ; msg = _T("LEFT") ; }
> + if ( r == 11 ) { ev.m_keyCode = WXK_UP ; msg = _T("UP") ; }
> + if ( r == 12 ) { ev.m_keyCode = WXK_DOWN ; msg = _T("DOWN") ; }
> +- if ( r == 13 ) { ev.m_keyCode = WXK_PRIOR ; msg = _T("PRIOR") ; }
> +- if ( r == 14 ) { ev.m_keyCode = WXK_NEXT ; msg = _T("NEXT") ; }
> ++ if ( r == 13 ) { ev.m_keyCode = WXK_PAGEUP ; msg = _T("PAGEUP") ; }
> ++ if ( r == 14 ) { ev.m_keyCode = WXK_PAGEDOWN ; msg = _T("PAGEDOWN") ; }
> + mylog ( "Testsuite:Key" , wxString::Format ( "%s" , msg.c_str() ) ) ;
> + if ( ac->def == _T("PrimerDesign") ) ((TPrimerDesign*)ac)->sc->OnCharHook(ev) ;
> + else ac->cSequence->OnCharHook(ev) ;
> +--- a/PCR_Troubleshoot.cpp
> ++++ b/PCR_Troubleshoot.cpp
> +@@ -415,13 +415,13 @@
> + if ( ( b - a ) / length > 4 )
> + {
> + add_error ( p , nr , msg ,
> +- wxString::Format ( txt("t_pcr_ts_warning_runs_text") , (char*)s.Mid(a,length).c_str() ) ) ;
> ++ wxString::Format ( txt("t_pcr_ts_warning_runs_text") , (const char*)s.Mid(a,length).c_str() ) ) ;
> + a = b - length ;
> + }
> + else if ( ( b - a ) / length == 4 )
> + {
> + add_warning ( p , nr , msg ,
> +- wxString::Format ( txt("t_pcr_ts_warning_runs_text2") , (char*)s.Mid(a,length).c_str() ) ) ;
> ++ wxString::Format ( txt("t_pcr_ts_warning_runs_text2") , (const char*)s.Mid(a,length).c_str() ) ) ;
> + a = b - length ;
> + }
> + }
> +@@ -489,7 +489,7 @@
> + int a ;
> + for ( a = 0 ; a < s.length() ; a++ )
> + {
> +- switch ( s.GetChar ( a ) )
> ++ switch ( (char)s.GetChar ( a ) )
> + {
> + case 'A' : s.SetChar ( a , 'T' ) ; break ;
> + case 'C' : s.SetChar ( a , 'G' ) ; break ;
> +--- a/SequenceCanvas.cpp
> ++++ b/SequenceCanvas.cpp
> +@@ -394,13 +394,13 @@
> + {
> + mark ( id , the_sequence->length() , the_sequence->length() , 2 ) ;
> + }
> +- else if ( k == WXK_PRIOR )
> ++ else if ( k == WXK_PAGEUP )
> + {
> + from -= page ;
> + if ( from < 1 ) from = 1 ;
> + mark ( id , from , from , 2 ) ;
> + }
> +- else if ( k == WXK_NEXT )
> ++ else if ( k == WXK_PAGEDOWN )
> + {
> + from += page ;
> + if ( from > the_sequence->length() ) from = the_sequence->length() ;
> +--- a/SequenceTypeAAstructure.cpp
> ++++ b/SequenceTypeAAstructure.cpp
> +@@ -400,7 +400,7 @@
> + dc.SetPen ( *pen_C ) ;
> + for ( a = 0 ; a < atom_pos.size() ; a++ )
> + {
> +- switch ( atom_type.GetChar ( a ) )
> ++ switch ( (char)atom_type.GetChar ( a ) )
> + {
> + case 'C' : if ( can->isPrinting() ) dc.SetPen ( *pen_C ) ; dc.SetBrush ( *brush_C ) ; break ;
> + case 'S' : if ( can->isPrinting() ) dc.SetPen ( *pen_S ) ; dc.SetBrush ( *brush_S ) ; break ;
> +--- a/SequenceTypePlot.cpp
> ++++ b/SequenceTypePlot.cpp
> +@@ -538,7 +538,7 @@
> + mylog ( "SeqPlot::useNcoils" , wxString::Format ( _T("BEGIN ncoils_function (%d): ") , b ) + s ) ;
> + x = ncoils_function ( (const char*) s.mb_str() , b ) . c_str() ;
> + mylog ( "SeqPlot::useNcoils" , "END ncoils_function" ) ;
> +- wxString t ( (char*) x.c_str() , wxConvUTF8 ) ;
> ++ wxString t ( (const char*) x.c_str() , wxConvUTF8 ) ;
> + wxArrayString ta ;
> + explode ( _T("\n") , t , ta ) ;
> + for ( b = 0 ; b < s.length() ; b++ )
> +--- a/TImageDisplay.cpp
> ++++ b/TImageDisplay.cpp
> +@@ -310,7 +310,7 @@
> +
> + if ( invert )
> + {
> +- int lf = pdc.GetLogicalFunction() ;
> ++ wxRasterOperationMode lf = pdc.GetLogicalFunction() ;
> + pdc.SetLogicalFunction ( wxINVERT ) ;
> + pdc.SetBrush ( *wxWHITE_BRUSH ) ;
> + pdc.SetPen ( *wxWHITE_PEN ) ;
> +--- a/TPhyloTree.cpp
> ++++ b/TPhyloTree.cpp
> +@@ -3,7 +3,6 @@
> + BEGIN_EVENT_TABLE(TPhyloTree, MyChildBase)
> + EVT_CLOSE(ChildBase::OnClose)
> + EVT_SET_FOCUS(ChildBase::OnFocus)
> +- EVT_SIZE(ChildBase::OnSize)
> + EVT_CHECKBOX(PHYLIP_DIRECT_LINES,TPhyloTree::OnDirectLines)
> + EVT_LISTBOX(PHYLIP_TREE_LIST,TPhyloTree::OnTreeList)
> + EVT_MENU(MDI_FILE_SAVE,TPhyloTree::OnFileSave)
> +--- a/TStorage.cpp
> ++++ b/TStorage.cpp
> +@@ -272,7 +272,7 @@
> + } while ( rc == SQLITE_BUSY ) ;
> +
> + ierror = e ? 1 : 0 ;
> +- if ( e ) error = wxString ( _T("An error has occurred when executing query ") + query , wxConvUTF8 ) ;
> ++ if ( e ) error = _T("An error has occurred when executing query ") + query;
> + else error = _T("Alles OK") ;
> +
> + sqlite3_close ( db ) ;
> +@@ -531,7 +531,7 @@
> + s1 = s2 = _T("") ;
> + for ( b = 0 ; b < f.GetCount() ; b++ )
> + {
> +- int id = r[(char*)f[b].c_str()] ;
> ++ int id = r[(const char*)f[b].c_str()] ;
> + if ( id > -1 ) sqlAdd ( s1 , s2 , f[b] , r[a][id] ) ;
> + else sqlAdd ( s1 , s2 , f[b] , _T("") ) ;
> + }
> +--- a/main.cpp
> ++++ b/main.cpp
> +@@ -253,7 +253,7 @@
> + if ( wxGetEnv ( _T("COILSDIR") , NULL ) ) wxUnsetEnv ( _T("COILSDIR") ) ;
> + wxSetEnv ( _T("COILSDIR") , homedir ) ;
> + #else
> +- putenv ( (char*) ncoilsdir.c_str() ) ;
> ++ setenv ( "COILSDIR" , homedir.c_str() , 1 ) ;
> + #endif
> +
> +
> +--- a/ChildBase.cpp
> ++++ b/ChildBase.cpp
> +@@ -223,7 +223,7 @@
> +
> + wxString wildcard = getExportFilters () ;
> + wxString lastdir = myapp()->frame->LS->getOption ( _T("LAST_IMPORT_DIR") , _T("C:") ) ;
> +- wxFileDialog d ( this , txt("export_file") , lastdir , _T("") , wildcard , wxSAVE|wxOVERWRITE_PROMPT ) ;
> ++ wxFileDialog d ( this , txt("export_file") , lastdir , _T("") , wildcard , wxFD_SAVE|wxFD_OVERWRITE_PROMPT ) ;
> + d.SetFilterIndex ( myapp()->frame->LS->getOption ( _T("LAST_EXPORT_FILTER") , 0 ) ) ;
> + int x = d.ShowModal() ;
> + if ( x != wxID_OK ) return ;
> diff -Nru gentle-1.9+cvs20100605+dfsg1/debian/rules gentle-1.9+cvs20100605+dfsg1/debian/rules
> --- gentle-1.9+cvs20100605+dfsg1/debian/rules 2013-10-16 20:35:13.000000000 +1300
> +++ gentle-1.9+cvs20100605+dfsg1/debian/rules 2014-06-08 16:55:29.000000000 +1200
> @@ -13,7 +13,7 @@
> CXXFLAGS=$(CXXFLAGS) dh_auto_configure
>
> override_dh_auto_build:
> - $(MAKE) CXXFLAGS=$(CXXFLAGS)
> + $(MAKE) -k CXXFLAGS=$(CXXFLAGS)
>
> override_dh_install:
> dh_install
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
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