[Debian-med-packaging] Bug#750906: gentle: Please update to use wxwidgets3.0

[Andreas Tille]

Wow, this was quick! Many thanks. :-)

Unfortunately there seems to be one final issue:

...
.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__  -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -c -o OnlineTools.o OnlineTools.cpp
g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"GENtle\" -DVERSION=\"1.5\" -I.   -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/wx/include/gtk2-unicode-3.0 -I/usr/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__  -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -c -o TEliteLaChromLogDialog.o TEliteLaChromLogDialog.cpp
g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"GENtle\" -DVERSION=\"1.5\" -I.   -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/wx/include/gtk2-unicode-3.0 -I/usr/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__  -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -c -o TRestrictionIdentifier.o TRestrictionIdentifier.cpp
g++  -D__DEBIAN__ -O2 -g -Wno-write-strings -DUSE_EXTERNAL_CLUSTALW -s -Wl,-z,relro -o GENtle TXMLfile.o TVectorTree.o TVirtualGel.o TVectorEditorItems.o TVectorEditorEnzymes.o TVectorEditor.o TVector.o SCFtype.o TStoreAllDialog.o TDotPlot.o TUndo.o TUReadSeq.o TStorage.o TSilmutDialog.o TRestrictionEditor.o TPrimer.o TPrimerDialog.o TPDB.o TLigationDialog.o TMainTree.o todo.o TItemEditDialog.o TImageDisplay.o TIMGreader.o TextImportDialog.o TClone.o SequenceTypes.o TCalculator.o SequenceTypeRestriction.o SequenceTypePlot.o SequenceTypeFeature.o SequenceTypeDNA.o SequenceTypeAlign.o SequenceTypeABI.o SequenceTypeAA.o SequenceCanvas.o SendHTTP.o RestrictionEnzymes.o ProgramOptionsDialog.o PlasmidCanvasLinear.o PrimerDesign.o PlasmidCanvasHandlers.o PlasmidCanvasCircular.o PlasmidCanvas.o MyFrame.o MyChild.o MiscDialogs.o ManageDatabase.o main.o GenBank.o FindSequenceDialog.o ExternalNCBI.o ExternalInterface.o ExternalBLAST.o ChildBase.o CoolCanvas.o AminoAcids.o Alignment.o ABIviewer.o ABItype.o TAlignmentDialog.o AutoAnnotate.o TGraph.o TGraphDisplay.o TGraphScale.o CGview.o ureadseq.o ncoils.o TPhylip.o TPhyloTree.o PCR_Troubleshoot.o TProteolysis.o element.o gp_out.o ipc.o pars.o CloneManager.o CloningAssistant.o TSequencingAssistantDialog.o AlignmentAppearanceDialog.o SequenceTypeAAstructure.o OnlineTools.o TEliteLaChromLogDialog.o TRestrictionIdentifier.o -L/usr/lib/x86_64-linux-gnu -pthread   -lwx_gtk2u_xrc-3.0 -lwx_gtk2u_html-3.0 -lwx_gtk2u_qa-3.0 -lwx_gtk2u_adv-3.0 -lwx_gtk2u_core-3.0 -lwx_baseu_xml-3.0 -lwx_baseu_net-3.0 -lwx_baseu-3.0  -L/usr/lib -L/usr/local/lib -lsqlite -lsqlite3 -lmysqlclient -ltinyxml 
ExternalBLAST.o: In function `wxEvtHandler::AddPendingEvent(wxEvent const&)':
/usr/include/wx-3.0/wx/event.h:3395: undefined reference to `wxCommandEvent::Clone() const'
collect2: error: ld returned 1 exit status
Makefile:618: recipe for target 'GENtle' failed
make[2]: *** [GENtle] Error 1
make[2]: Target 'all' not remade because of errors.
make[2]: Leaving directory '/tmp/buildd/gentle-1.9+cvs20100605+dfsg1'
debian/rules:16: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/tmp/buildd/gentle-1.9+cvs20100605+dfsg1'
debian/rules:10: recipe for target 'build' failed
...


I'm building in a recent pbuilder environment. Any hint?

Kind regards and thanks for your effort

      Andreas.


On Thu, Jun 26, 2014 at 06:10:35PM +1200, Olly Betts wrote:
> You wrote:
> > could you please put your two quilt patches in a tarball and send it
> > to me to avoid such line ending trouble?
> 
> Attached.
> 
> Cheers,
>     Olly



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