[Debian-med-packaging] Bug#753217: r-bioc-biovizbase: FTBFS: ERROR: lazy loading failed for package 'biovizBase'

[David Suárez]

Source: r-bioc-biovizbase
Version: 1.10.7-1
Severity: serious
Tags: jessie sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20140628 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/«PKGBUILDDIR»/src'
> make[1]: Leaving directory '/«PKGBUILDDIR»/src'
> installing to /«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase/libs
> ** R
> ** data
> ** inst
> ** preparing package for lazy loading
> Error : objects 'GAlignments', 'GAlignmentPairs', 'Union', 'IntersectionNotEmpty', 'IntersectionStrict', 'findSpliceOverlaps' are not exported by 'namespace:GenomicRanges'
> ERROR: lazy loading failed for package 'biovizBase'
> * removing '/«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase'
> make: *** [R_any_arch] Error 1

The full build log is available from:
   http://aws-logs.debian.net/ftbfs-logs/2014/06/28/r-bioc-biovizbase_1.10.7-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.