[Debian-med-packaging] [mrtrix] branch master updated (ba21677 -> d3b6f18)
Michael Hanke
mih at moszumanska.debian.org
Sun Mar 9 06:43:27 UTC 2014
This is an automated email from the git hooks/post-receive script.
mih pushed a change to branch master
in repository mrtrix.
from ba21677 Add backport patches for Octave deps.
new c702e79 Imported Upstream version 0.2.12
new cc5f330 Merge tag 'upstream/0.2.12'
new d3b6f18 Update packaging.
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Doxyfile | 2 +-
build | 544 +++++++++++++------------
cmd/cat_tracks.cpp | 94 +++++
cmd/csdeconv.cpp | 2 +-
cmd/disp_profile.cpp | 2 +-
cmd/dwi2tensor.cpp | 2 +-
cmd/estimate_response.cpp | 2 +-
cmd/find_SH_peaks.cpp | 6 +-
cmd/gen_ROI.cpp | 2 +-
cmd/median3D.cpp | 6 +-
cmd/mradd.cpp | 2 +-
cmd/mrcat.cpp | 2 +-
cmd/mrconvert.cpp | 24 +-
cmd/mrstats.cpp | 6 +-
cmd/mrtransform.cpp | 6 +-
cmd/mrview.cpp | 1 +
cmd/streamtrack.cpp | 12 +-
cmd/threshold.cpp | 8 +-
cmd/tracks2prob.cpp | 6 +-
debian/changelog | 9 +
debian/compat | 2 +-
debian/control | 4 +-
debian/copyright | 9 +-
debian/patches/debian_build_cfg | 56 +--
debian/patches/lucid-dsc-patch-octave_deps | 2 +-
doc/appendix/config.html | 6 +-
doc/appendix/index.html | 6 +-
doc/appendix/mrtrix.html | 6 +-
doc/appendix/refs.html | 6 +-
doc/commands/average.html | 8 +-
doc/commands/{mradd.html => cat_tracks.html} | 26 +-
doc/commands/cleanup_ANTS_warp.html | 8 +-
doc/commands/csdeconv.html | 6 +-
doc/commands/dicom_filename.html | 6 +-
doc/commands/dir2amp.html | 6 +-
doc/commands/disp_profile.html | 6 +-
doc/commands/dwi2SH.html | 6 +-
doc/commands/dwi2tensor.html | 6 +-
doc/commands/erode.html | 6 +-
doc/commands/estimate_response.html | 6 +-
doc/commands/filter_tracks.html | 6 +-
doc/commands/find_SH_peaks.html | 6 +-
doc/commands/gen_ROI.html | 6 +-
doc/commands/gen_WM_mask.html | 6 +-
doc/commands/gen_unit_warp.html | 6 +-
doc/commands/gendir.html | 6 +-
doc/commands/import_tracks.html | 6 +-
doc/commands/index.html | 5 +-
doc/commands/median3D.html | 6 +-
doc/commands/mrabs.html | 6 +-
doc/commands/mradd.html | 6 +-
doc/commands/mrcat.html | 6 +-
doc/commands/mrconvert.html | 14 +-
doc/commands/mrinfo.html | 6 +-
doc/commands/mrmult.html | 6 +-
doc/commands/mrstats.html | 6 +-
doc/commands/mrtransform.html | 6 +-
doc/commands/mrview.html | 6 +-
doc/commands/normalise_tracks.html | 6 +-
doc/commands/read_dicom.html | 6 +-
doc/commands/read_ximg.html | 6 +-
doc/commands/resample_tracks.html | 6 +-
doc/commands/sample_tracks.html | 6 +-
doc/commands/sdeconv.html | 6 +-
doc/commands/select_tracks.html | 6 +-
doc/commands/streamtrack.html | 6 +-
doc/commands/tensor2ADC.html | 6 +-
doc/commands/tensor2FA.html | 6 +-
doc/commands/tensor2vector.html | 6 +-
doc/commands/tensor_metric.html | 6 +-
doc/commands/threshold.html | 6 +-
doc/commands/track_info.html | 6 +-
doc/commands/tracks2prob.html | 6 +-
doc/commands/tracks2vtk.html | 6 +-
doc/commands/truncate_tracks.html | 6 +-
doc/faq.html | 6 +-
doc/general/cmdline.html | 6 +-
doc/general/formats.html | 6 +-
doc/general/index.html | 6 +-
doc/general/mrview.html | 6 +-
doc/general/overview.html | 6 +-
doc/index.html | 8 +-
doc/install/index.html | 6 +-
doc/install/macosx.html | 6 +-
doc/install/unix.html | 6 +-
doc/install/windows.html | 6 +-
doc/intro.html | 6 +-
doc/tractography/dwi.html | 6 +-
doc/tractography/index.html | 6 +-
doc/tractography/preprocess.html | 6 +-
doc/tractography/roi.html | 6 +-
doc/tractography/tracking.html | 6 +-
lib/file/dicom/image.cpp | 2 +-
lib/file/dicom/mapper.cpp | 72 +++-
lib/image/format/analyse.cpp | 4 +-
lib/image/format/nifti1.cpp | 4 +-
lib/image/name_parser.cpp | 11 +-
lib/image/object.cpp | 2 +-
lib/image/position.h | 4 +-
lib/math/vector.h | 4 +-
lib/mrtrix.cpp | 2 +-
lib/mrtrix.h | 8 +-
lib/svn_revision.h | 2 +-
matlab/write_mrtrix.m | 4 +-
src/dwi/SH.cpp | 8 +-
src/dwi/gradient.cpp | 44 +-
src/dwi/render_frame.cpp | 4 +-
src/dwi/render_frame.h | 2 +-
src/dwi/renderer.cpp | 2 +-
src/dwi/sdeconv/MCMC.cpp | 4 +-
src/dwi/shells.h | 269 ++++++++++++
src/dwi/tractography/tracker/base.cpp | 1 +
src/dwi/tractography/tracker/base.h | 17 +-
src/dwi/tractography/tracker/dt_stream.h | 3 +-
src/dwi/tractography/tracker/sd_prob.cpp | 27 +-
src/dwi/tractography/tracker/sd_prob.h | 7 +
src/dwi/tractography/tracker/sd_stream.cpp | 25 +-
src/dwi/tractography/tracker/sd_stream.h | 24 --
src/histogram.cpp | 4 +-
src/mrview/image.cpp | 4 +-
src/mrview/pane.cpp | 3 +-
src/mrview/sidebar/overlay.cpp | 4 +-
src/mrview/sidebar/roi_analysis.cpp | 45 +-
src/mrview/sidebar/roi_analysis.h | 13 +-
src/mrview/sidebar/roi_analysis/roi_list.cpp | 388 ++++++++++++++++--
src/mrview/sidebar/roi_analysis/roi_list.h | 70 +++-
src/mrview/sidebar/tractography.cpp | 1 +
src/mrview/sidebar/tractography/roi_list.cpp | 1 +
src/mrview/sidebar/tractography/track_list.cpp | 1 +
src/mrview/window.cpp | 1 +
sysconf/darwin.py | 14 +-
sysconf/linux.py | 4 +-
132 files changed, 1621 insertions(+), 734 deletions(-)
create mode 100644 cmd/cat_tracks.cpp
copy doc/commands/{mradd.html => cat_tracks.html} (62%)
create mode 100644 src/dwi/shells.h
--
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