[Debian-med-packaging] [mrtrix] 02/03: Merge tag 'upstream/0.2.12'
Michael Hanke
mih at moszumanska.debian.org
Sun Mar 9 06:43:28 UTC 2014
This is an automated email from the git hooks/post-receive script.
mih pushed a commit to branch master
in repository mrtrix.
commit cc5f3301f57d3814d277fc4601ce375272d8cad1
Merge: ba21677 c702e79
Author: Michael Hanke <michael.hanke at gmail.com>
Date: Sat Mar 8 20:25:58 2014 +0100
Merge tag 'upstream/0.2.12'
Upstream version 0.2.12
# gpg: Signature made Sat 08 Mar 2014 08:25:53 PM CET using RSA key ID 7FFB9E9B
# gpg: Good signature from "Michael Hanke <michael.hanke at gmail.com>"
# gpg: aka "Michael Hanke <michael.hanke at dartmouth.edu>"
# gpg: aka "Michael Hanke <michael.hanke at ovgu.de>"
# gpg: aka "[jpeg image of size 1962]"
# gpg: aka "Michael Hanke <mih at voxindeserto.de>"
# gpg: aka "Michael Hanke <mih at debian.org>"
Doxyfile | 2 +-
build | 544 +++++++++++++------------
cmd/cat_tracks.cpp | 94 +++++
cmd/csdeconv.cpp | 2 +-
cmd/disp_profile.cpp | 2 +-
cmd/dwi2tensor.cpp | 2 +-
cmd/estimate_response.cpp | 2 +-
cmd/find_SH_peaks.cpp | 6 +-
cmd/gen_ROI.cpp | 2 +-
cmd/median3D.cpp | 6 +-
cmd/mradd.cpp | 2 +-
cmd/mrcat.cpp | 2 +-
cmd/mrconvert.cpp | 24 +-
cmd/mrstats.cpp | 6 +-
cmd/mrtransform.cpp | 6 +-
cmd/mrview.cpp | 1 +
cmd/streamtrack.cpp | 12 +-
cmd/threshold.cpp | 8 +-
cmd/tracks2prob.cpp | 6 +-
doc/appendix/config.html | 6 +-
doc/appendix/index.html | 6 +-
doc/appendix/mrtrix.html | 6 +-
doc/appendix/refs.html | 6 +-
doc/commands/average.html | 8 +-
doc/commands/{mradd.html => cat_tracks.html} | 26 +-
doc/commands/cleanup_ANTS_warp.html | 8 +-
doc/commands/csdeconv.html | 6 +-
doc/commands/dicom_filename.html | 6 +-
doc/commands/dir2amp.html | 6 +-
doc/commands/disp_profile.html | 6 +-
doc/commands/dwi2SH.html | 6 +-
doc/commands/dwi2tensor.html | 6 +-
doc/commands/erode.html | 6 +-
doc/commands/estimate_response.html | 6 +-
doc/commands/filter_tracks.html | 6 +-
doc/commands/find_SH_peaks.html | 6 +-
doc/commands/gen_ROI.html | 6 +-
doc/commands/gen_WM_mask.html | 6 +-
doc/commands/gen_unit_warp.html | 6 +-
doc/commands/gendir.html | 6 +-
doc/commands/import_tracks.html | 6 +-
doc/commands/index.html | 5 +-
doc/commands/median3D.html | 6 +-
doc/commands/mrabs.html | 6 +-
doc/commands/mradd.html | 6 +-
doc/commands/mrcat.html | 6 +-
doc/commands/mrconvert.html | 14 +-
doc/commands/mrinfo.html | 6 +-
doc/commands/mrmult.html | 6 +-
doc/commands/mrstats.html | 6 +-
doc/commands/mrtransform.html | 6 +-
doc/commands/mrview.html | 6 +-
doc/commands/normalise_tracks.html | 6 +-
doc/commands/read_dicom.html | 6 +-
doc/commands/read_ximg.html | 6 +-
doc/commands/resample_tracks.html | 6 +-
doc/commands/sample_tracks.html | 6 +-
doc/commands/sdeconv.html | 6 +-
doc/commands/select_tracks.html | 6 +-
doc/commands/streamtrack.html | 6 +-
doc/commands/tensor2ADC.html | 6 +-
doc/commands/tensor2FA.html | 6 +-
doc/commands/tensor2vector.html | 6 +-
doc/commands/tensor_metric.html | 6 +-
doc/commands/threshold.html | 6 +-
doc/commands/track_info.html | 6 +-
doc/commands/tracks2prob.html | 6 +-
doc/commands/tracks2vtk.html | 6 +-
doc/commands/truncate_tracks.html | 6 +-
doc/faq.html | 6 +-
doc/general/cmdline.html | 6 +-
doc/general/formats.html | 6 +-
doc/general/index.html | 6 +-
doc/general/mrview.html | 6 +-
doc/general/overview.html | 6 +-
doc/index.html | 8 +-
doc/install/index.html | 6 +-
doc/install/macosx.html | 6 +-
doc/install/unix.html | 6 +-
doc/install/windows.html | 6 +-
doc/intro.html | 6 +-
doc/tractography/dwi.html | 6 +-
doc/tractography/index.html | 6 +-
doc/tractography/preprocess.html | 6 +-
doc/tractography/roi.html | 6 +-
doc/tractography/tracking.html | 6 +-
lib/file/dicom/image.cpp | 2 +-
lib/file/dicom/mapper.cpp | 72 +++-
lib/image/format/analyse.cpp | 4 +-
lib/image/format/nifti1.cpp | 4 +-
lib/image/name_parser.cpp | 11 +-
lib/image/object.cpp | 2 +-
lib/image/position.h | 4 +-
lib/math/vector.h | 4 +-
lib/mrtrix.cpp | 2 +-
lib/mrtrix.h | 8 +-
lib/svn_revision.h | 2 +-
matlab/write_mrtrix.m | 4 +-
src/dwi/SH.cpp | 8 +-
src/dwi/gradient.cpp | 44 +-
src/dwi/render_frame.cpp | 4 +-
src/dwi/render_frame.h | 2 +-
src/dwi/renderer.cpp | 2 +-
src/dwi/sdeconv/MCMC.cpp | 4 +-
src/dwi/shells.h | 269 ++++++++++++
src/dwi/tractography/tracker/base.cpp | 1 +
src/dwi/tractography/tracker/base.h | 17 +-
src/dwi/tractography/tracker/dt_stream.h | 3 +-
src/dwi/tractography/tracker/sd_prob.cpp | 27 +-
src/dwi/tractography/tracker/sd_prob.h | 7 +
src/dwi/tractography/tracker/sd_stream.cpp | 25 +-
src/dwi/tractography/tracker/sd_stream.h | 24 --
src/histogram.cpp | 4 +-
src/mrview/image.cpp | 4 +-
src/mrview/pane.cpp | 3 +-
src/mrview/sidebar/overlay.cpp | 4 +-
src/mrview/sidebar/roi_analysis.cpp | 45 +-
src/mrview/sidebar/roi_analysis.h | 13 +-
src/mrview/sidebar/roi_analysis/roi_list.cpp | 388 ++++++++++++++++--
src/mrview/sidebar/roi_analysis/roi_list.h | 70 +++-
src/mrview/sidebar/tractography.cpp | 1 +
src/mrview/sidebar/tractography/roi_list.cpp | 1 +
src/mrview/sidebar/tractography/track_list.cpp | 1 +
src/mrview/window.cpp | 1 +
sysconf/darwin.py | 14 +-
sysconf/linux.py | 4 +-
126 files changed, 1584 insertions(+), 689 deletions(-)
--
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