[Debian-med-packaging] Bug#746624: python-biopython: FTBFS - t_coffee needs HOME or TMP

[Andreas Tille]

Hi Aaron,

thanks for your bug report.  I wonder whether you could test this at you
site and add this variable to the line ind debian/rules starting with

   env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss

since the problem you reported does not occure on amd64 I can just wild
guess and it would be great if you could test it on an architecture
where this problem actually occures.

It would be sufficient if you simply commit the change to SVN and I can
upload your tested patch.

Kind regards

        Andreas.

On Thu, May 01, 2014 at 11:09:52PM -0400, Aaron M. Ucko wrote:
> Source: python-biopython
> Version: 1.63+dfsg-1
> Severity: serious
> Justification: fails to build from source (but built successfully in the past)
> 
> Builds of python-biopython on the autobuilders, which decline to
> provide home directories, have been failing:
> 
>   ApplicationError: Command 't_coffee -infile Fasta/fa01' returned non-zero exit status 135, '--ERROR:  : Could not set a HOME directory.Set any of the following environement variables to some suitable location: HOME, HOME_4_TCOFFEE, TMP or TEMP [FATAL:T-COFFEE]'
> 
> and likewise for the other two t_coffee tests.  Please arrange to
> point one of those variables to a temporary directory in the build
> tree.
> 
> Thanks!
> 
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