[Debian-med-packaging] Testsuite fails when trying to build Debian packages from python-biom-format

[Andreas Tille]

Hi Greg,

I tried to build Debian packages from version 2.0 of biom-format but
got this test result when running the test suite:


EEE......................
======================================================================
ERROR: Failure: NameError (global name '_type_handlers' is not defined)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 414, in loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/tmp/buildd/python-biom-format-2.0.0+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/convert.py", line 57, in <module>
    Help='Process metadata associated with observations when '
  File "/usr/lib/python2.7/dist-packages/pyqi/core/interfaces/html/__init__.py", line 67, in __init__
    super(HTMLInputOption, self).__init__(Type=Type, **kwargs)
  File "/usr/lib/python2.7/dist-packages/pyqi/core/interface.py", line 239, in __init__
    self._validate_option()
  File "/usr/lib/python2.7/dist-packages/pyqi/core/interfaces/html/__init__.py", line 123, in _validate_option
    elif type(self.Choices) not in (_type_handlers.TupleType, types.ListType):
NameError: global name '_type_handlers' is not defined

======================================================================
ERROR: Failure: ImportError (cannot import name html_list_of_strings)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 414, in loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/tmp/buildd/python-biom-format-2.0.0+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/show_install_info.py", line 25, in <module>
    from pyqi.core.interfaces.html.output_handler import html_list_of_strings
ImportError: cannot import name html_list_of_strings

======================================================================
ERROR: Failure: ImportError (cannot import name write_or_print_list_of_strings)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 414, in loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/tmp/buildd/python-biom-format-2.0.0+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/summarize_table.py", line 23, in <module>
    from pyqi.core.interfaces.optparse.output_handler import (
ImportError: cannot import name write_or_print_list_of_strings

----------------------------------------------------------------------
Ran 25 tests in 0.245s

FAILED (errors=3)
E: pybuild pybuild:256: test: plugin distutils failed with: exit code=1: cd /tmp/buildd/python-biom-format-2.0.0+dfsg/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose --with-doctest.


Any hint?

Kind regards

        Andreas.


-- 
http://fam-tille.de