[Debian-med-packaging] Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting

[gregor herrmann]

Control: tag -1 + confirmed patch

On Sun, 09 Nov 2014 08:07:04 +0100, Lucas Nussbaum wrote:

> Source: biojava3-live
> Version: 3.1.0+dfsg-1
> Severity: serious
> Tags: jessie sid
> User: debian-qa at lists.debian.org
> Usertags: qa-ftbfs-20141108 qa-ftbfs
> Justification: FTBFS in jessie on amd64

 
> > javadocs:

> >   [javadoc] /«BUILDDIR»/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII
> >   [javadoc]  * @author  Kalle N???slund (docs)
> >   [javadoc]                    ^
> >   [javadoc] /«BUILDDIR»/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII
> >   [javadoc]  * @author  Kalle N???slund (docs)
> >   [javadoc]                     ^
> >   [javadoc] /«BUILDDIR»/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII
> >   [javadoc]  * @author  Kalle N???slund (docs)
> >   [javadoc]                      ^

The package doesn't build in my sid chroot (because of some rdep
glitch [0]) but I've tested the attached patch in a jessie chroot.

(There are other ways to tell javadoc about the file encodings but
that was my first try and it works.)



Cheers,
gregor


[0]
Errors were encountered while processing:
 icedtea-netx:amd64
E: Sub-process /usr/bin/dpkg returned an error code (1)
Failed to perform requested operation on package.  Trying to recover:
Setting up icedtea-netx:amd64 (1.5.1-1) ...
update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken
update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link
update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken
update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link
update-alternatives: error: alternative path /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/javaws doesn't exist
dpkg: error processing package icedtea-netx:amd64 (--configure):
 subprocess installed post-installation script returned error exit status 2
Errors were encountered while processing:
 icedtea-netx:amd64

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