[Debian-med-packaging] Bug#671524: Dropping coverage patch in Samtools ?
Charles Plessy
plessy at debian.org
Wed Nov 26 08:49:04 UTC 2014
Le Fri, Jul 27, 2012 at 02:51:13PM +0000, Debian Bug Tracking System a écrit :
>
> Changes:
> samtools (0.1.18-2) unstable; urgency=low
> .
> * added patch to fix segfault in mpileup (Closes: #544976)
> * added patch to fix coverage cap (Closes: #671524)
Hi Dominique and everybody,
in recent versions of samtools, the mpileup command has a new option
to specify the coverage at run time.
Would it be fine to drop our patch that was raising the default coverage cap
from 8,000 to 1,000,000 ? If yes, do you think we need to mention it as a NEWS
entry ?
Here is a link to our patch: http://anonscm.debian.org/cgit/debian-med/samtools.git/tree/debian/patches/fix_coverage_cap.patch.
And here is a link to the pull request where I was informed about the new option.
https://github.com/samtools/samtools/issues/284
Have a nice day,
--
Charles
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