[Debian-med-packaging] Bug#765285: mapsembler2: FTBFS on non-x86: xmmintrin.h: No such file or directory

Sebastian Ramacher sramacher at debian.org
Mon Oct 13 21:31:49 UTC 2014


Source: mapsembler2
Version: 2.2.1+dfsg-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

mapsembler2 FTBFS on non x86 architectures with:
| [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
| In file included from /«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/build/ext/gatb-core/include/emphf/mphf.hpp:5:0,
|                  from /«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:30,
|                  from /«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:39,
|                  from /«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
| /«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/build/ext/gatb-core/include/emphf/bitpair_vector.hpp:3:23: fatal error: xmmintrin.h: No such file or directory
|  #include <xmmintrin.h>
|                        ^
| compilation terminated.
| make[4]: *** [ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o] Error 1
| ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make:330: recipe for target 'ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o' failed

See
https://buildd.debian.org/status/fetch.php?pkg=mapsembler2&arch=arm64&ver=2.2.1+dfsg-3&stamp=1412832848
for a full build log.

Cheers
-- 
Sebastian Ramacher
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