[Debian-med-packaging] Bug#765285: Problem building mapsembler2 on several architectures: xmmintrin.h: No such file or directory

[Andreas Tille]

Hi,

even the new version of mapsembler2 fails on some architectures:

Unfortunately it still fails on mips, mipsel and powerpc with
| [ 97%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o
| Linking CXX executable ../bin/dbgh5
| ../lib/libgatbcore.a(Storage.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::tools::math::NativeInt8>::insert(gatb::core::tools::math::NativeInt8 const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<64u>::Count>::insert(gatb::core::kmer::impl::Kmer<64u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<96u>::Count>::insert(gatb::core::kmer::impl::Kmer<96u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<128u>::Count>::insert(gatb::core::kmer::impl::Kmer<128u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<32u>::Count>::insert(gatb::core::kmer::impl::Kmer<32u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(DebloomAlgorithm.cpp.o):/«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: more undefined references to `__sync_fetch_and_add_8' follow
| collect2: error: ld returned 1 exit status


Can anybody give some hint or should we remove mapsembler2 from these
architectures to fix the problem?

Kind regards

      Andreas.

-- 
http://fam-tille.de