[Debian-med-packaging] kissplice test fails on several architectures

[Andreas Tille]

Hi David,

according to the build status page of kissplice[1] the tests are failing
on non 64bit architectures.  Using the log of i386 as example it looks
like

...
   dh_auto_test -a
make[1]: Entering directory '/«PKGBUILDDIR»/obj-i586-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j1
Test project /«PKGBUILDDIR»/obj-i586-linux-gnu
    Start 1: KisspliceBasicTest
1/8 Test #1: KisspliceBasicTest ...............   Passed    0.11 sec
    Start 2: KisspliceDBGTest
2/8 Test #2: KisspliceDBGTest .................***Failed  Required regular expression not found.Regex=[test SUCCESSFUL
] 30.98 sec
/«PKGBUILDDIR»/obj-i586-linux-gnu/bin/kissplice -k 25 -M 1000 -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75brain_100000.fasta -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75liver_100000.fasta -o /«PKGBUILDDIR»/tests/integration_tests/results
Integration test error :  Problem with /«PKGBUILDDIR»/obj-i586-linux-gnu/lib/kissplice/ks_kissreadsSNPS


    Start 3: KisspliceTwoSequencesTest
3/8 Test #3: KisspliceTwoSequencesTest ........***Failed  Required regular expression not found.Regex=[test SUCCESSFUL
] 21.68 sec
/«PKGBUILDDIR»/obj-i586-linux-gnu/bin/kissplice -s -k 25 -M 1000 -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75brain_100000.fasta -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75liver_100000.fasta -C 0
Integration test error :  Problem with /«PKGBUILDDIR»/obj-i586-linux-gnu/lib/kissplice/ks_kissreadsSNPS


    Start 4: KisspliceGraphAndSequenceTest
4/8 Test #4: KisspliceGraphAndSequenceTest ....***Failed  Required regular expression not found.Regex=[test SUCCESSFUL
] 10.03 sec
/«PKGBUILDDIR»/obj-i586-linux-gnu/bin/kissplice -s -k 25 -M 1000 -g /«PKGBUILDDIR»/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75brain_100000.fasta -C 0
Integration test error :  Problem with /«PKGBUILDDIR»/obj-i586-linux-gnu/lib/kissplice/ks_kissreadsSNPS


    Start 5: KisspliceGraphTest
5/8 Test #5: KisspliceGraphTest ...............   Passed   10.04 sec
    Start 6: ksBubbleEnumerationTest
6/8 Test #6: ksBubbleEnumerationTest ..........   Passed    0.04 sec
    Start 7: ksRunModulesTest
7/8 Test #7: ksRunModulesTest .................   Passed    0.05 sec
    Start 8: ksErrorRemovalTest
8/8 Test #8: ksErrorRemovalTest ...............   Passed    0.13 sec

63% tests passed, 3 tests failed out of 8

Total Test time (real) =  73.08 sec

The following tests FAILED:
	  2 - KisspliceDBGTest (Failed)
	  3 - KisspliceTwoSequencesTest (Failed)
	  4 - KisspliceGraphAndSequenceTest (Failed)
Errors while running CTest
make[1]: *** [test] Error 8
...


Do you see any chance to fix this?

Kind regards

       Andreas.


[1] https://buildd.debian.org/status/package.php?p=kissplice

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