[Debian-med-packaging] samtools_1.0-1_amd64.changes ACCEPTED into unstable

Tue Sep 23 01:33:48 UTC 2014

Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Tue, 23 Sep 2014 09:36:27 +0900
Source: samtools
Binary: samtools samtools-test
Architecture: source amd64 all
Version: 1.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
 samtools   - processing sequence alignments in SAM and BAM formats
 samtools-test - test files for the samtools package.
Closes: 544976
Changes:
 samtools (1.0-1) unstable; urgency=low
 .
   [ Charles Plessy ]
   54ca0c1 Merge with upstream's develop branch.
   241a731 razip was removed from samtools.
   dc25b81 debian/watch: also track release candidates.
   07aaf71 Indicate repository layout in git-buildpackage conf. file.
 .
   * debian/control
 .
   8bc0fb7 Stop depending on CDBS and quilt.
   e613142 Drop static libbam, replaced by the dynamic libhts (Closes: #544976).
   b5f284c Build-depend on tabix for the regression tests, that use bgzip.
   9febad6 Recommend python since samtools installs a python script in /usr/bin.
   0446ed7 Conforms with Policy 3.5.6.
 .
   * New package samtools-test
 .
   7293cca Create a test package for the test data.
   6bd7b89 Adjust install file for two-package build.
   caff5f5 Clean before installing test files (this removes compiled files).
 .
   * debian/rules
 .
   c930cbb Use Debhelper instead of CDBS and rely on the new upstream Makefile.
   845581d Adjust for dynamic linking.
   d859052 Indicate path to packaged bgzip.
   cb23517 Mimick Makefile's CPPFLAGS.
   aee1c6c Allow parallel building.
   edc09e4 Prevent Makefile from including local copy of the HTSlib.
 .
   * debian/patches
 .
   f73d764 d062687 Refreshed patches.
   2c52f6a 61ac2c5 Forwarded patches on GitHub.
   b8eb378 Dropped fix_example_makefile.patch, obsolete.
   66079b9 Correct path to python interpreter.
   218c1c1 Modify Makefile to facilitate dynamic linking.
 .
   [ Andreas Tille ]
   f69f412 Versioned Build-Depends libhts-dev >= 1.0
Checksums-Sha1:
 d8e3b49287aa4e9d7670bd03cddf634200ac1e08 2078 samtools_1.0-1.dsc
 78bdac301a2a342a2cfac100b79fb5fa99808114 4291657 samtools_1.0.orig.tar.gz
 72232adde17be5fff6c7439fb33e9cdd8b1d039f 9552 samtools_1.0-1.debian.tar.xz
 a2999ffe52bfa44cca205bc6d91191a0e9903f81 376468 samtools_1.0-1_amd64.deb
 cafafae60bb5ee79e0b897057fa17e8287dccb13 2635574 samtools-test_1.0-1_all.deb
Checksums-Sha256:
 594e766341954502c0da3e47f01904c62a0f358740b46c6546bdd725b9e1a317 2078 samtools_1.0-1.dsc
 c9be4ca074d9645f2782394c95366040f6d2e7334b513968fa8fb26460b626fe 4291657 samtools_1.0.orig.tar.gz
 f8a74a708658b528ac86374e8ada20c3bcd4500644209a6920a62cbf3a15ac8b 9552 samtools_1.0-1.debian.tar.xz
 d9cf341a930fa11866b5601cca4cc0765d918bb1353b723a6a8f26285f63a6e5 376468 samtools_1.0-1_amd64.deb
 83e7a19ab43ee530aa530bf74fd5328a382521f602b516c9ad0724062e8ba080 2635574 samtools-test_1.0-1_all.deb
Files:
 ded5642fc9ac0870395680178dd86019 376468 science optional samtools_1.0-1_amd64.deb
 99a0f3e55ebde2ab99175619ba9e7bb2 2635574 science optional samtools-test_1.0-1_all.deb
 2e3cb69ec34e0f5f2a6b7ba33c0457a4 2078 science optional samtools_1.0-1.dsc
 7eff9d605f21b0910887424069bae72e 4291657 science optional samtools_1.0.orig.tar.gz
 7859390d8a854b5b8a3e2f28612419ce 9552 science optional samtools_1.0-1.debian.tar.xz

Thank you for your contribution to Debian.