[Debian-med-packaging] Bug#763218: python-pysam: FTBFS: Tests failures

[David Suárez]

Source: python-pysam
Version: 0.7.7-1
Severity: serious
Tags: jessie sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20140926 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> ======================================================================
> FAIL: testBAM (__main__.TestUnmappedReads)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "./pysam_test_offline.py", line 998, in testBAM
>     self.assertEqual( len(list(samfile.fetch( until_eof = True))), 2 )
> AssertionError: 0 != 2
> 
> ----------------------------------------------------------------------
> Ran 158 tests in 9.110s
> 
> FAILED (failures=2, errors=31)
> E: pybuild pybuild:256: test: plugin custom failed with: exit code=1: cd tests && PYTHONPATH=/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build python2.7 ./pysam_test_offline.py
> dh_auto_test: pybuild --test -i python{version} -p 2.7 --dir . returned exit code 13
> make[1]: *** [override_dh_auto_test] Error 13
> debian/rules:29: recipe for target 'override_dh_auto_test' failed

The full build log is available from:
   http://aws-logs.debian.net/ftbfs-logs/2014/09/26/python-pysam_0.7.7-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.