[Debian-med-packaging] Bug#782697: ITP: murasaki -- homology detection tool across multiple large genomes

Andreas Tille tille at debian.org
Thu Apr 16 11:37:57 UTC 2015

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : murasaki
  Version         : 1.68.6
  Upstream Author : Kris Popendorf <comp at bio.keio.ac.jp>
* URL             : http://murasaki.dna.bio.keio.ac.jp/wiki/
* License         : GPL
  Programming Lang: C++, Perl
  Description     : homology detection tool across multiple large genomes
 Murasaki is a scalable and fast, language theory-based homology
 detection tool across multiple large genomes. It enable whole-genome
 scale multiple genome global alignments. Supports unlimited length
 gapped-seed patterns and unique TF-IDF based filtering.
 Murasaki is an anchor alignment software, which is
  * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
    40 nodes: 52 wall minutes))
  * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
    Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
  * unlimited pattern length
  * repeat tolerant
  * intelligent noise reduction

The package will be maintained by the Debian Med team at
  Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/murasaki/trunk/

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