[Debian-med-packaging] Need a (hopefully) last kick for finalising qualimap
Andreas Tille
andreas at an3as.eu
Wed Dec 2 16:14:17 UTC 2015
Hi again,
I became better now by patching pom.xml further and ejml is found now.
But why the local files coming with the source are not found is
mysterious to me ... :-(
Kind regards
Andreas.
On Wed, Dec 02, 2015 at 03:37:21PM +0100, Andreas Tille wrote:
> Hi Emmanuel,
>
> On Wed, Dec 02, 2015 at 01:25:24PM +0100, Emmanuel Bourg wrote:
> > Le 2/12/2015 13:18, Andreas Tille a écrit :
> > > "only dependency with system scope can specify systemPath."
> >
> > Just add <scope>system</scope> where you added <systemPath>.
> >
> > *kick*
>
> Done (and pushed) and better but seems not to be final. :-(
>
>
> [INFO] ------------------------------------------------------------------------
> [ERROR] BUILD ERROR
> [INFO] ------------------------------------------------------------------------
> [INFO] Failed to resolve artifact.
>
> Missing:
> ----------
> 1) org.bioinfo:bioinfo-ngs:jar:debian
>
> Try downloading the file manually from the project website.
>
> Then, install it using the command:.
> mvn install:install-file -DgroupId=org.bioinfo -DartifactId=bioinfo-ngs -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file
>
> Alternatively, if you host your own repository you can deploy the file there:.
> mvn deploy:deploy-file -DgroupId=org.bioinfo -DartifactId=bioinfo-ngs -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
>
> Path to dependency:.
> 1) org.bioinfo.ngs:qualimap:jar:2.1.3-dev
> 2) org.bioinfo:bioinfo-ngs:jar:debian
>
> 2) org.bioinfo:bioinfo-commons:jar:debian
>
> Try downloading the file manually from the project website.
>
> Then, install it using the command:.
> mvn install:install-file -DgroupId=org.bioinfo -DartifactId=bioinfo-commons -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file
>
> Alternatively, if you host your own repository you can deploy the file there:.
> mvn deploy:deploy-file -DgroupId=org.bioinfo -DartifactId=bioinfo-commons -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
>
> Path to dependency:.
> 1) org.bioinfo.ngs:qualimap:jar:2.1.3-dev
> 2) org.bioinfo:bioinfo-commons:jar:debian
>
> 3) org.ejml:ejml:jar:debian
>
> Try downloading the file manually from the project website.
>
> Then, install it using the command:.
> mvn install:install-file -DgroupId=org.ejml -DartifactId=ejml -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file
>
> Alternatively, if you host your own repository you can deploy the file there:.
> mvn deploy:deploy-file -DgroupId=org.ejml -DartifactId=ejml -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
>
> Path to dependency:.
> 1) org.bioinfo.ngs:qualimap:jar:2.1.3-dev
> 2) org.ejml:ejml:jar:debian
>
>
> 1)+2) are the "own" java files inside the source tree and 3) should come
> from /usr/share/java/EJML.jar (libejml-java package).
>
> Seems I did not git it right yet. :-(
>
> Sorry for my constant bothering here
>
> Andreas.
>
> --
> http://fam-tille.de
--
http://fam-tille.de
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