[Debian-med-packaging] Bug#807150: gubbins: FTBFS on i386: Invalid ALN file for multiple lines per seq

[Andreas Tille]

Hi Andrew,

I hereby forward a build issue on i386 architecture.

Kind regards

       Andreas.

On Sat, Dec 05, 2015 at 10:30:32PM -0500, Aaron M. Ucko wrote:
> Source: gubbins
> Version: 1.4.3-1
> Severity: important
> Justification: fails to build from source
> 
> The i386 build of gubbins failed:
> 
>   FAIL: run_all_tests
>   ============================================================================
>   Testsuite summary for gubbins 1.4.3
>   ============================================================================
>   # TOTAL: 1
>   # PASS:  0
>   # SKIP:  0
>   # XFAIL: 0
>   # FAIL:  1
>   # XPASS: 0
>   # ERROR: 0
>   ============================================================================
>   See src/test-suite.log
> 
> I was able to reproduce the error in an i386 chroot, yielding the following
> details:
> 
>   FAIL: run_all_tests
>   ===================
>   
>   Running suite(s): Creating_SNP_Sites
>    Parsing a phylip file
>    Parsing a vcf file
>    checking branch sequences
>    Checking the gubbins functionality
>    snp_searching
>   94%: Checks: 39, Failures: 2, Errors: 0
>   ../tests/check_snp_sites.c:73:F:snp_sites:valid_alignment_with_multiple_lines_per_sequence:0: Invalid ALN file for multiple lines per seq
>   ../tests/check_snp_sites.c:85:F:snp_sites:two_sequences:0: Invalid ALN file for multiple lines per seq
>   FAIL run_all_tests (exit status: 1)
> 
> Could you please take a look?
> 
> Thanks!
> 
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