[Debian-med-packaging] Bug#807150: gubbins: FTBFS on i386: Invalid ALN file for multiple lines per seq

[Andrew Page]

Hi,
I have pushed a fix for the build error on i386 as version 1.4.4
Details are here:
https://github.com/sanger-pathogens/gubbins/pull/158 <https://github.com/sanger-pathogens/gubbins/pull/158>

I replicated the bug on i386 and fixed it. The tests also pass on amd64 & OSX 10.10

Regards,
Andrew


> On 6 Dec 2015, at 06:40, Andreas Tille <andreas at an3as.eu> wrote:
> 
> Hi Andrew,
> 
> I hereby forward a build issue on i386 architecture.
> 
> Kind regards
> 
>       Andreas.
> 
> On Sat, Dec 05, 2015 at 10:30:32PM -0500, Aaron M. Ucko wrote:
>> Source: gubbins
>> Version: 1.4.3-1
>> Severity: important
>> Justification: fails to build from source
>> 
>> The i386 build of gubbins failed:
>> 
>>  FAIL: run_all_tests
>>  ============================================================================
>>  Testsuite summary for gubbins 1.4.3
>>  ============================================================================
>>  # TOTAL: 1
>>  # PASS:  0
>>  # SKIP:  0
>>  # XFAIL: 0
>>  # FAIL:  1
>>  # XPASS: 0
>>  # ERROR: 0
>>  ============================================================================
>>  See src/test-suite.log
>> 
>> I was able to reproduce the error in an i386 chroot, yielding the following
>> details:
>> 
>>  FAIL: run_all_tests
>>  ===================
>> 
>>  Running suite(s): Creating_SNP_Sites
>>   Parsing a phylip file
>>   Parsing a vcf file
>>   checking branch sequences
>>   Checking the gubbins functionality
>>   snp_searching
>>  94%: Checks: 39, Failures: 2, Errors: 0
>>  ../tests/check_snp_sites.c:73:F:snp_sites:valid_alignment_with_multiple_lines_per_sequence:0: Invalid ALN file for multiple lines per seq
>>  ../tests/check_snp_sites.c:85:F:snp_sites:two_sequences:0: Invalid ALN file for multiple lines per seq
>>  FAIL run_all_tests (exit status: 1)
>> 
>> Could you please take a look?
>> 
>> Thanks!
>> 
>> _______________________________________________
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>> Debian-med-packaging at lists.alioth.debian.org
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>> 
> 
> -- 
> http://fam-tille.de




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