[Debian-med-packaging] Bug#807979: bamtools cannot open bam files on big endian systems

Dominique Belhachemi domibel at debian.org
Tue Dec 15 02:09:40 UTC 2015


Package: bamtools
Version: 2.4.0+dfsg-2
Severity: grave


This bug affects big endian systems (mips, powerpc, ...) . It is not
possible to handle bam files.

Here is a quick test case:

$ bamtools count -in test.bam
bamtools count ERROR: could not open input BAM file(s)... Aborting.


I filed a bug report upstream with a detailed explanation.
https://github.com/pezmaster31/bamtools/issues/113


Best
-Dominique



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