[Debian-med-packaging] picard-tools and htsjdk

[Andreas Tille]

Hi Vincent,

as I wrote in my previous mail I just detected some things of what you
wrote below on my own.  Please feel free to revert anything I might have
messed up in Git (and sorry for beeing impatiently ;-)).

Thanks for your work on this

     Andreas.

On Sat, Dec 19, 2015 at 10:49:58PM +0100, Vincent Danjean wrote:
>   Hi,
> 
>   After long weeks in NEW, htsjdk has been accepted by FTP master.
>   They accept htsjdk (1.138+dfsg.1-2) but do not handle libhtsjdk-java
> (1.138+dfsg.1-3) source package. Indeed, I renamed the source package
> as proposed by Andreas at that time.
>   However, as Charles told us that keeping htsjdk as source package name
> is fine too, I just decided to not bother the FTP team and keep
> the htsjdk source package name.
>   So libhtsjdk-java (1.138+dfsg.1-3) has been removed from the NEW
> queue and htsjdk (1.138+dfsg.1-4) has just been uploaded (only a
> source package changed name between both)
>   Warning: I rename the git repository (libhtsjdk-java.git => htsjdk.git)
> in the debian-med alioth project. So update your .git/config to fix URL
> if needed (or redo a clone if you do not have local changes)
> 
> 
>   I also uploaded the ready picard-tools package (1.138+dfsg.1-1)
> that depends on libhtsjdk-java.
> 
>   Note that both htsjdk and picard-tools have a new upstream release 2.0
> nowadays. The "problem" is that the new htsjdk has a dependency on
> a new ngs-java software...
>   It is probable that I will try to take care of it, but I do not know
> when I will have time to do it. Fell free to start it if you wish.
> 
>   Regards
>     Vincent
> 
> -- 
> Vincent Danjean       GPG key ID 0xD17897FA         vdanjean at debian.org
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> APT repo:  deb http://people.debian.org/~vdanjean/debian unstable main
> 
> 
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