[Debian-med-packaging] Bug#808537: jellyfish: FTBFS: error: 'template<class> class std::auto_ptr' is deprecated [-Werror=deprecated-declarations]

[Chris West (Faux)]

Source: jellyfish
Version: 2.2.4-1
Severity: serious
Justification: fails to build from source
Tags: sid 
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-CC: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

The package fails to build:

g++ -DHAVE_CONFIG_H -I.  -Wall -Wnon-virtual-dtor -I. -I./include -g -O3  -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -Werror -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/count_main.o sub_commands/count_main.cc
sub_commands/count_main.cc: In function ‘int count_main(int, char**)’:
sub_commands/count_main.cc:248:8: error: ‘template<class> class std::auto_ptr’ is deprecated [-Werror=deprecated-declarations]
   std::auto_ptr<jellyfish::dumper_t<mer_array> > dumper;
        ^
In file included from /usr/include/c++/5/memory:81:0,
                 from sub_commands/count_main.cc:28:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
   template<typename> class auto_ptr;
                            ^
cc1plus: all warnings being treated as errors
Makefile:1615: recipe for target 'sub_commands/count_main.o' failed
make[3]: *** [sub_commands/count_main.o] Error 1
make[3]: Leaving directory '/jellyfish-2.2.4'

Full build log:
https://reproducible.debian.net/rb-pkg/unstable/amd64/jellyfish.html

-- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)