[Debian-med-packaging] Bug#808799: marked as done (python-cogent: build-depends on bwa makes it unbuildable on most architecture)

Wed Dec 23 17:09:22 UTC 2015

Hi,

I just noticed that infernal also needs to be excluded.

No need to reopen - I'll upload a new version soon.

Kind regards

       Andreas.

On Wed, Dec 23, 2015 at 04:36:04PM +0000, Debian Bug Tracking System wrote:
> Your message dated Wed, 23 Dec 2015 16:33:25 +0000
> with message-id <E1aBmLt-0003Ga-TL at franck.debian.org>
> and subject line Bug#808799: fixed in python-cogent 1.5.3-4
> has caused the Debian Bug report #808799,
> regarding python-cogent: build-depends on bwa makes it unbuildable on most architecture
> to be marked as done.
> 
> This means that you claim that the problem has been dealt with.
> If this is not the case it is now your responsibility to reopen the
> Bug report if necessary, and/or fix the problem forthwith.
> 
> (NB: If you are a system administrator and have no idea what this
> message is talking about, this may indicate a serious mail system
> misconfiguration somewhere. Please contact owner at bugs.debian.org
> immediately.)
> 
> 
> -- 
> 808799: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=808799
> Debian Bug Tracking System
> Contact owner at bugs.debian.org with problems

> Date: Wed, 23 Dec 2015 07:34:45 +0000
> From: Mattia Rizzolo <mattia at debian.org>
> To: Debian Bug Tracking System <submit at bugs.debian.org>
> Subject: python-cogent: build-depends on bwa makes it unbuildable on most
>  architecture
> 
> Package: src:python-cogent
> Version: 1.5.3-3
> 
> Starting from 1.5.3-3 python-cogent build-depends on bwa, which is
> available only on amd64 archs; as a result it didn't built on
>      arm64 armel armhf i386 mips mipsel powerpc ppc64el s390x
>         hurd-i386 kfreebsd-i386
>      alpha hppa m68k mips64el ppc64 sh4 sparc64 x32
> 
> The first line of failures are what is preventing the testing migration
> of this package.
> 
> Also, given that we're keeping around the old sources and the old
> binaries not yet updated, those old cruft still build-depend/depend on
> python-support, scheduled for removal.
> 
> Please either ask ftp-masters to remove the binaries on those archs or
> relax the build-depends on bwa to [any-amd64] to get it build on all the
> archs (the choice depends on how important is to run the tests, I
> guess).
> 
> Thanks in advance!
> 
> 
> -- 
> regards,
>                         Mattia Rizzolo
> 
> GPG Key: 66AE 2B4A FCCF 3F52 DA18  4D18 4B04 3FCD B944 4540      .''`.
> more about me:  http://mapreri.org                              : :'  :
> Launchpad user: https://launchpad.net/~mapreri                  `. `'`
> Debian QA page: https://qa.debian.org/developer.php?login=mattia  `-

> Date: Wed, 23 Dec 2015 16:33:25 +0000
> From: Andreas Tille <tille at debian.org>
> To: 808799-close at bugs.debian.org
> Subject: Bug#808799: fixed in python-cogent 1.5.3-4
> 
> Source: python-cogent
> Source-Version: 1.5.3-4
> 
> We believe that the bug you reported is fixed in the latest version of
> python-cogent, which is due to be installed in the Debian FTP archive.
> 
> A summary of the changes between this version and the previous one is
> attached.
> 
> Thank you for reporting the bug, which will now be closed.  If you
> have further comments please address them to 808799 at bugs.debian.org,
> and the maintainer will reopen the bug report if appropriate.
> 
> Debian distribution maintenance software
> pp.
> Andreas Tille <tille at debian.org> (supplier of updated python-cogent package)
> 
> (This message was generated automatically at their request; if you
> believe that there is a problem with it please contact the archive
> administrators by mailing ftpmaster at ftp-master.debian.org)
> 
> 
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA256
> 
> Format: 1.8
> Date: Wed, 23 Dec 2015 15:23:04 +0100
> Source: python-cogent
> Binary: python-cogent python-cogent-doc
> Architecture: source amd64 all
> Version: 1.5.3-4
> Distribution: unstable
> Urgency: medium
> Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
> Changed-By: Andreas Tille <tille at debian.org>
> Description:
>  python-cogent - framework for genomic biology
>  python-cogent-doc - docs for python-cogent
> Closes: 808799
> Changes:
>  python-cogent (1.5.3-4) unstable; urgency=medium
>  .
>    * Build-Depends: bwa [any-amd64] and exclude bwa tests for other
>      architectures
>      Closes: #808799
>    * Really activate tests but only those that are known to pass.  All
>      failed tests excluded for the moment - more detailed investigation
>      is needed
>    * Drop debug package in favour of automatically generated one
>    * Add hint about tests to README.Debian.
> Checksums-Sha1:
>  745dee7ff812b6e7e15fd33e6eb0a6593320d5e4 2330 python-cogent_1.5.3-4.dsc
>  d1845cdb2468b21391476b8af18a201c96813562 10892 python-cogent_1.5.3-4.debian.tar.xz
>  143f494f5daacd030ecd043441146a8840430057 563118 python-cogent-dbgsym_1.5.3-4_amd64.deb
>  198bcc5c0011a878b23d2936c68eb869d7e31a56 2907798 python-cogent-doc_1.5.3-4_all.deb
>  08fc270b1855765b1720f86faa8715ce893c3efd 954560 python-cogent_1.5.3-4_amd64.deb
> Checksums-Sha256:
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>  6cd352c068f1d1d2d1a7c7fcaf6ca99ecbf0278d68f04f5aa4cbb7d21d1decba 10892 python-cogent_1.5.3-4.debian.tar.xz
>  d99dbf528dab4c138768162caf0b15aa6df31813de794853764d0eb58e28abf7 563118 python-cogent-dbgsym_1.5.3-4_amd64.deb
>  dc7a0ab423ac1e83c271f3b0887a2978154ec86dd1fede3846800c85cf1e135b 2907798 python-cogent-doc_1.5.3-4_all.deb
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> Files:
>  1f45f6f90a4e4fdf2034043005978e70 2330 python optional python-cogent_1.5.3-4.dsc
>  cbcbf2aeef9eb0260191981926e67d9c 10892 python optional python-cogent_1.5.3-4.debian.tar.xz
>  ccec8ab1dd7721475fab56aa5e6256e0 563118 debug extra python-cogent-dbgsym_1.5.3-4_amd64.deb
>  021b48f8b8ed43e369cbc834d71ada0f 2907798 doc optional python-cogent-doc_1.5.3-4_all.deb
>  364ca3f36d2eed9a3da5aaf718c41c67 954560 python optional python-cogent_1.5.3-4_amd64.deb
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