[Debian-med-packaging] Bug#776881: closed by Charles Plessy <plessy at debian.org> (Bug#776881: fixed in bowtie 1.1.1-2)

Tue Feb 3 17:50:47 UTC 2015

Thanks!

On Tue Feb 03 2015 at 4:21:08 AM Debian Bug Tracking System <
owner at bugs.debian.org> wrote:

> This is an automatic notification regarding your Bug report
> which was filed against the bowtie package:
>
> #776881: bowtie: '-debug' binaries break `bowtie-build`
>
> It has been closed by Charles Plessy <plessy at debian.org>.
>
> Their explanation is attached below along with your original report.
> If this explanation is unsatisfactory and you have not received a
> better one in a separate message then please contact Charles Plessy <
> plessy at debian.org> by
> replying to this email.
>
>
> --
> 776881: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=776881
> Debian Bug Tracking System
> Contact owner at bugs.debian.org with problems
>
>
>
> ---------- Forwarded message ----------
> From: Charles Plessy <plessy at debian.org>
> To: 776881-close at bugs.debian.org
> Cc:
> Date: Tue, 03 Feb 2015 03:19:00 +0000
> Subject: Bug#776881: fixed in bowtie 1.1.1-2
> Source: bowtie
> Source-Version: 1.1.1-2
>
> We believe that the bug you reported is fixed in the latest version of
> bowtie, which is due to be installed in the Debian FTP archive.
>
> A summary of the changes between this version and the previous one is
> attached.
>
> Thank you for reporting the bug, which will now be closed.  If you
> have further comments please address them to 776881 at bugs.debian.org,
> and the maintainer will reopen the bug report if appropriate.
>
> Debian distribution maintenance software
> pp.
> Charles Plessy <plessy at debian.org> (supplier of updated bowtie package)
>
> (This message was generated automatically at their request; if you
> believe that there is a problem with it please contact the archive
> administrators by mailing ftpmaster at ftp-master.debian.org)
>
>
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA512
>
> Format: 1.8
> Date: Tue, 03 Feb 2015 10:44:39 +0900
> Source: bowtie
> Binary: bowtie bowtie-examples
> Architecture: source amd64 all
> Version: 1.1.1-2
> Distribution: unstable
> Urgency: high
> Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.
> alioth.debian.org>
> Changed-By: Charles Plessy <plessy at debian.org>
> Description:
>  bowtie     - Ultrafast memory-efficient short read aligner
>  bowtie-examples - Examples for bowtie, the ultrafast memory-efficient
> short read al
> Closes: 776881
> Changes:
>  bowtie (1.1.1-2) unstable; urgency=high
>  .
>    * Team upload.
>    * Install missing commands.  Closes: #776881.
> Checksums-Sha1:
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>  0e26e94bbc417620c580061503abd54397176224 13064
> bowtie_1.1.1-2.debian.tar.xz
>  98a40fd8f05f9131be1e772558b0e3f08696fc46 1369362 bowtie_1.1.1-2_amd64.deb
>  2b586fc20f2f2c8654b7fc48624e5083a82ce241 6307360
> bowtie-examples_1.1.1-2_all.deb
> Checksums-Sha256:
>  44f5af7bdedfc5330c004b37f3c014ecbefe5d290a593eb9b6e4be8d639897ed 2195
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> bowtie_1.1.1-2.debian.tar.xz
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> bowtie_1.1.1-2_amd64.deb
>  a77dd074cecef4dce1b1cb8aa021bafdeb7c90211c315f759a83ed4a8ccd255d 6307360
> bowtie-examples_1.1.1-2_all.deb
> Files:
>  2210cbccf2207c970495ee228d0629ba 2195 science optional bowtie_1.1.1-2.dsc
>  2a35d285f03c48d7619f40c198551720 13064 science optional
> bowtie_1.1.1-2.debian.tar.xz
>  116b8244f07442931ce4aaff2f910f0c 1369362 science optional
> bowtie_1.1.1-2_amd64.deb
>  1067dde15b877c86092bbee12bebef3c 6307360 science optional
> bowtie-examples_1.1.1-2_all.deb
>
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>
> ---------- Forwarded message ----------
> From: "Michael R. Crusoe" <michael.crusoe at gmail.com>
> To: Debian Bug Tracking System <submit at bugs.debian.org>
> Cc:
> Date: Mon, 02 Feb 2015 20:14:46 +0000
> Subject: bowtie: '-debug' binaries break `bowtie-build`
> Package: bowtie
> Version: 1.1.1-1
> Severity: grave
> Justification: renders package unusable
>
>
> Hello,
>
> Looks like the debug versions of 'bowtie-build-l' and 'bowtie-build-s' are
> present instead thus breaking the 'bowtie-build' wrapper making the package
> useless.
>
>
>
> -- System Information:
> Debian Release: 8.0
>   APT prefers unstable
>   APT policy: (500, 'unstable')
> Architecture: amd64 (x86_64)
>
> Kernel: Linux 3.13.0-44-generic (SMP w/12 CPU cores)
> Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set
> to C)
> Shell: /bin/sh linked to /bin/dash
> Init: unable to detect
>
> Versions of packages bowtie depends on:
> ii  libc6       2.19-14
> ii  libgcc1     1:4.9.2-10
> ii  libstdc++6  4.9.2-10
> ii  python      2.7.8-2
>
> bowtie recommends no packages.
>
> Versions of packages bowtie suggests:
> pn  bowtie-examples  <none>
>
> -- no debconf information
>
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