[Debian-med-packaging] Bug#777809: camitk: ftbfs with GCC-5

[Matthias Klose]

Package: src:camitk
Version: 3.4.0-1
Severity: normal
Tags: sid stretch
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-5

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-5/g++-5, but succeeds to build with gcc-4.9/g++-4.9. The
severity of this report may be raised before the stretch release.

The full build log can be found at:
http://people.debian.org/~doko/logs/gcc5-20150205/camitk_3.4.0-1_unstable_gcc5.log
The last lines of the build log are at the end of this report.

To build with GCC 5, either set CC=gcc-5 CXX=g++-5 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t experimental install g++ 

Common build failures are C11 as the default C mode, new warnings
resulting in build failures with -Werror turned on, or new/dropped
symbols in Debian symbols files.  For other C/C++ related build failures
see the porting guide at http://gcc.gnu.org/gcc-5/porting_to.html

[...]
Linking CXX shared library ../../../lib/camitk-3.4/components/libdicom.so
cd /«PKGBUILDDIR»/camitk-build/imaging/components/dicom && /usr/bin/cmake -E cmake_link_script CMakeFiles/component-dicom.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2   -Wno-deprecated  -Wl,-z,relro -Wl,--as-needed  -shared -Wl,-soname,libdicom.so.3 -o ../../../lib/camitk-3.4/components/libdicom.so.3.4.0 CMakeFiles/component-dicom.dir/DicomDialogEntry.cpp.o CMakeFiles/component-dicom.dir/DicomSerie.cpp.o CMakeFiles/component-dicom.dir/DicomDialog.cpp.o CMakeFiles/component-dicom.dir/DicomParser.cpp.o CMakeFiles/component-dicom.dir/DicomComponent.cpp.o CMakeFiles/component-dicom.dir/DicomComponentExtension.cpp.o CMakeFiles/component-dicom.dir/moc_DicomComponentExtension.cxx.o CMakeFiles/component-dicom.dir/moc_DicomDialog.cxx.o CMakeFiles/component-dicom.dir/moc_DicomComponent.cxx.o  -L/«PKGBUILDDIR»/camitk-build/lib/camitk-3.4  -L/«PKGBUILDDIR»/camitk-build/lib  -L/«PKGBUILDDIR»/camitk-build/bin  -L/sbuild-nonexistent/.config/CamiTK/lib/camitk-3.4  -L/sbuild-nonexistent/.config/CamiTK/lib  -L/sbuild-nonexistent/.config/CamiTK/bin  -L/«PKGBUILDDIR»/camitk-build/lib/camitk-3.4/components  -L/«PKGBUILDDIR»/camitk-build/lib/camitk-3.4/actions  -L/sbuild-nonexistent/.config/CamiTK/lib/camitk-3.4/components  -L/sbuild-nonexistent/.config/CamiTK/lib/camitk-3.4/actions -lcamitkcore -lQtXmlPatterns -lQtGui -lQtXml -lQtNetwork -lQtCore /usr/lib/libvtkCommon.so.5.8.0 /usr/lib/libvtkFiltering.so.5.8.0 /usr/lib/libvtkGenericFiltering.so.5.8.0 /usr/lib/libvtkGraphics.so.5.8.0 /usr/lib/libvtkHybrid.so.5.8.0 /usr/lib/libvtkImaging.so.5.8.0 /usr/lib/libvtkIO.so.5.8.0 /usr/lib/libvtkRendering.so.5.8.0 /usr/lib/libvtkVolumeRendering.so.5.8.0 /usr/lib/libvtkftgl.so.5.8.0 /usr/lib/libvtkWidgets.so.5.8.0 /usr/lib/libQVTK.so.5.8.0 -lqtpropertybrowser /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmMEXD.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.2.4.4 /usr/lib/x86_64-linux-gnu/libvtkgdcm.so.2.4.4 /usr/lib/libvtkViews.so.5.8.0 /usr/lib/libvtkInfovis.so.5.8.0 /usr/lib/libvtkWidgets.so.5.8.0 /usr/lib/libvtkHybrid.so.5.8.0 /usr/lib/libvtkVolumeRendering.so.5.8.0 /usr/lib/libvtkParallel.so.5.8.0 /usr/lib/libvtkQtChart.so.5.8.0 -lQtGui -lQtSql -lQtNetwork -lQtCore /usr/lib/libvtkRendering.so.5.8.0 /usr/lib/libvtkGraphics.so.5.8.0 /usr/lib/libvtkImaging.so.5.8.0 /usr/lib/libvtkIO.so.5.8.0 /usr/lib/libvtkFiltering.so.5.8.0 /usr/lib/libvtkCommon.so.5.8.0 -lm /usr/lib/libvtksys.so.5.8.0 -ldl /usr/lib/libvtkftgl.so.5.8.0 -lGL -lfreetype /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.2.4.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.2.4.4 
cd /«PKGBUILDDIR»/camitk-build/imaging/components/dicom && /usr/bin/cmake -E cmake_symlink_library ../../../lib/camitk-3.4/components/libdicom.so.3.4.0 ../../../lib/camitk-3.4/components/libdicom.so.3 ../../../lib/camitk-3.4/components/libdicom.so
make[3]: Leaving directory '/«PKGBUILDDIR»/camitk-build'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/camitk-build/CMakeFiles  56 57
[ 51%] Built target component-dicom
make -f imaging/components/itkimage/CMakeFiles/component-itkimage.dir/build.make imaging/components/itkimage/CMakeFiles/component-itkimage.dir/depend
make[3]: Entering directory '/«PKGBUILDDIR»/camitk-build'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/camitk-build/CMakeFiles 
[ 51%] Generating moc_ItkImageComponent.cxx
cd /«PKGBUILDDIR»/camitk-build/imaging/components/itkimage && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/«PKGBUILDDIR»/camitk-build/imaging/components/itkimage/moc_ItkImageComponent.cxx_parameters
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/camitk-build/CMakeFiles 
[ 51%] Generating moc_ItkImageComponentExtension.cxx
cd /«PKGBUILDDIR»/camitk-build/imaging/components/itkimage && /usr/lib/x86_64-linux-gnu/qt4/bin/moc @/«PKGBUILDDIR»/camitk-build/imaging/components/itkimage/moc_ItkImageComponentExtension.cxx_parameters
cd /«PKGBUILDDIR»/camitk-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/imaging/components/itkimage /«PKGBUILDDIR»/camitk-build /«PKGBUILDDIR»/camitk-build/imaging/components/itkimage /«PKGBUILDDIR»/camitk-build/imaging/components/itkimage/CMakeFiles/component-itkimage.dir/DependInfo.cmake --color=
Scanning dependencies of target component-itkimage
make[3]: Leaving directory '/«PKGBUILDDIR»/camitk-build'
make -f imaging/components/itkimage/CMakeFiles/component-itkimage.dir/build.make imaging/components/itkimage/CMakeFiles/component-itkimage.dir/build
make[3]: Entering directory '/«PKGBUILDDIR»/camitk-build'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/camitk-build/CMakeFiles 
[ 51%] Building CXX object imaging/components/itkimage/CMakeFiles/component-itkimage.dir/ItkImageComponent.cpp.o
cd /«PKGBUILDDIR»/camitk-build/imaging/components/itkimage && /usr/bin/c++   -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XMLPATTERNS_LIB -DQT_XML_LIB -D_SCL_SECURE_NO_WARNINGS -Dcomponent_itkimage_EXPORTS -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2   -Wno-deprecated  -ftemplate-depth-50 -Wall -Wno-deprecated -w -fPIC -I/usr/include/InsightToolkit/Review/Statistics -I/usr/include/InsightToolkit/Review -I/usr/include/InsightToolkit/Utilities/vxl/core -I/usr/include/InsightToolkit/Utilities/vxl/vcl -I/usr/include/InsightToolkit/Utilities/vxl/v3p/netlib -I/usr/include/InsightToolkit/Utilities -I/usr/include/InsightToolkit/Utilities/itkExtHdrs -I/usr/include/InsightToolkit/Utilities/nifti/znzlib -I/usr/include/InsightToolkit/Utilities/nifti/niftilib -I/usr/include/InsightToolkit/Utilities/expat -I/usr/include/InsightToolkit/Utilities/DICOMParser -I/usr/include/InsightToolkit/Utilities/NrrdIO -I/usr/include/InsightToolkit/Utilities/MetaIO -I/usr/include/InsightToolkit/SpatialObject -I/usr/include/InsightToolkit/Numerics/NeuralNetworks -I/usr/include/InsightToolkit/Numerics/FEM -I/usr/include/InsightToolkit/IO -I/usr/include/InsightToolkit/Numerics -I/usr/include/InsightToolkit/Common -I/usr/include/InsightToolkit/BasicFilters -I/usr/include/InsightToolkit/Algorithms -I/usr/include/InsightToolkit -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtXmlPatterns -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtXml -isystem /usr/include/qt4/QtCore -I/usr/include/vtk-5.8 -I/«PKGBUILDDIR»/camitk-build/include/camitk-3.4 -I/«PKGBUILDDIR»/camitk-build/include/camitk-3.4/libraries -I/«PKGBUILDDIR»/camitk-build/include/camitk-3.4/libraries/qtpropertybrowser -I/«PKGBUILDDIR»/camitk-build/include/camitk-3.4/libraries/camitkcore -I/sbuild-nonexistent/.config/CamiTK/include/camitk-3.4 -I/«PKGBUILDDIR»/camitk-build/imaging/components/itkimage -I/«PKGBUILDDIR»/imaging/components/itkimage -I/usr/include/gdcm-2.4    -fPIC -o CMakeFiles/component-itkimage.dir/ItkImageComponent.cpp.o -c /«PKGBUILDDIR»/imaging/components/itkimage/ItkImageComponent.cpp
In file included from /usr/include/InsightToolkit/Utilities/vxl/vcl/vcl_limits.h:5:0,
                 from /usr/include/InsightToolkit/Common/itkNumericTraits.h:31,
                 from /usr/include/InsightToolkit/Common/itkNumericTraitsFixedArrayPixel.h:20,
                 from /usr/include/InsightToolkit/Common/itkFixedArray.txx:21,
                 from /usr/include/InsightToolkit/Common/itkFixedArray.h:262,
                 from /usr/include/InsightToolkit/Common/itkIndex.h:23,
                 from /usr/include/InsightToolkit/Common/itkImageRegion.h:25,
                 from /usr/include/InsightToolkit/IO/itkImageIORegion.h:24,
                 from /usr/include/InsightToolkit/IO/itkImageIOBase.h:23,
                 from /usr/include/InsightToolkit/IO/itkImageFileReader.h:20,
                 from /«PKGBUILDDIR»/imaging/components/itkimage/ItkImageComponent.cpp:41:
/usr/include/InsightToolkit/Utilities/vxl/vcl/vcl_compiler.h:123:4: error: #error "Dunno about this gcc"
 #  error "Dunno about this gcc"
    ^
make[3]: *** [imaging/components/itkimage/CMakeFiles/component-itkimage.dir/ItkImageComponent.cpp.o] Error 1
imaging/components/itkimage/CMakeFiles/component-itkimage.dir/build.make:67: recipe for target 'imaging/components/itkimage/CMakeFiles/component-itkimage.dir/ItkImageComponent.cpp.o' failed
make[3]: Leaving directory '/«PKGBUILDDIR»/camitk-build'
make[2]: *** [imaging/components/itkimage/CMakeFiles/component-itkimage.dir/all] Error 2
CMakeFiles/Makefile2:3122: recipe for target 'imaging/components/itkimage/CMakeFiles/component-itkimage.dir/all' failed
make[2]: Leaving directory '/«PKGBUILDDIR»/camitk-build'
make[1]: *** [all] Error 2
Makefile:150: recipe for target 'all' failed
make[1]: Leaving directory '/«PKGBUILDDIR»/camitk-build'
dh_auto_build: make -j1 returned exit code 2
make: *** [build-arch] Error 2
debian/rules:58: recipe for target 'build-arch' failed
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2