[Debian-med-packaging] Bug#777886: gofigure2: ftbfs with GCC-5

Matthias Klose doko at debian.org
Thu Feb 12 10:32:04 UTC 2015


Package: src:gofigure2
Version: 0.9.0-3
Severity: normal
Tags: sid stretch
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-5

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-5/g++-5, but succeeds to build with gcc-4.9/g++-4.9. The
severity of this report may be raised before the stretch release.

The full build log can be found at:
http://people.debian.org/~doko/logs/gcc5-20150205/gofigure2_0.9.0-3_unstable_gcc5.log
The last lines of the build log are at the end of this report.

To build with GCC 5, either set CC=gcc-5 CXX=g++-5 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t experimental install g++ 

Common build failures are C11 as the default C mode, new warnings
resulting in build failures with -Werror turned on, or new/dropped
symbols in Debian symbols files.  For other C/C++ related build failures
see the porting guide at http://gcc.gnu.org/gcc-5/porting_to.html

[...]
 export template <class T>
 ^
/usr/include/InsightToolkit/Utilities/vxl/core/vnl/algo/vnl_svd.h:204:1: warning: keyword 'export' not implemented, and will be ignored
 export template <class T>
 ^
In file included from /usr/include/InsightToolkit/Utilities/vxl/core/vnl/vnl_matrix_fixed.txx:15:0,
                 from /usr/include/InsightToolkit/Common/itkImageBase.h:36,
                 from /usr/include/InsightToolkit/Common/itkImage.h:20,
                 from /usr/include/InsightToolkit/Common/itkImageToImageFilter.h:23,
                 from /usr/include/InsightToolkit/Common/itkInPlaceImageFilter.h:23,
                 from /usr/include/InsightToolkit/BasicFilters/itkUnaryFunctorImageFilter.h:20,
                 from /usr/include/InsightToolkit/BasicFilters/itkInvertIntensityImageFilter.h:20,
                 from /«PKGBUILDDIR»/Code/IO/GoImage/GoImageProcessor.h:45,
                 from /«PKGBUILDDIR»/Code/IO/GoImage/GoLSMImageProcessor.h:42,
                 from /«PKGBUILDDIR»/Code/IO/GoImage/GoLSMImageProcessor.cxx:36:
/usr/include/InsightToolkit/Utilities/vxl/core/vnl/vnl_vector_fixed.h:37:1: warning: keyword 'export' not implemented, and will be ignored
 export template <class T, unsigned int n> class vnl_vector_fixed;
 ^
/usr/include/InsightToolkit/Utilities/vxl/core/vnl/vnl_vector_fixed.h:38:1: warning: keyword 'export' not implemented, and will be ignored
 export template <class T, unsigned int num_rows, unsigned int num_cols> class vnl_matrix_fixed;
 ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/build/CMakeFiles 
[ 18%] Building CXX object Code/IO/CMakeFiles/QGoIO.dir/QueryBuilderHelper.cxx.o
cd /«PKGBUILDDIR»/build/Code/IO && /usr/bin/c++   -DENABLEFFMPEG -DGOFIGURE2_BUILD_SHARED_LIBS -DHAS_OPENMP -DQGoIO_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DVTKTRUNK -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -fopenmp  -Wno-deprecated  -ftemplate-depth-50 -Wall -Wno-deprecated -fPIC -I/«PKGBUILDDIR»/build/Main -I/«PKGBUILDDIR»/Main -I/«PKGBUILDDIR»/build/Code/ExternalCode/ctk -I/«PKGBUILDDIR»/Code/ExternalCode/ctk -I/«PKGBUILDDIR»/build/Code/ExternalCode/PoissonReconstruction -I/«PKGBUILDDIR»/Code/ExternalCode/PoissonReconstruction -I/«PKGBUILDDIR»/Code/ExternalCode/itkQt -I/«PKGBUILDDIR»/build/Code/ExternalCode/itkQt -I/«PKGBUILDDIR»/build/Code/ExternalCode/vtkLSM -I/«PKGBUILDDIR»/Code/ExternalCode/vtkLSM -I/«PKGBUILDDIR»/build/Code/ExternalCode/MegaVTK/vtkRenderingAddOn -I/«PKGBUILDDIR»/Code/ExternalCode/MegaVTK/vtkRenderingAddOn -I/«PKGBUILDDIR»/build/Code/ExternalCode/MegaVTK/vtkItk -I/«PKGBUILDDIR»/Code/ExternalCode/MegaVTK/vtkItk -I/«PKGBUILDDIR»/build/Code/ExternalCode/MegaVTK -I/«PKGBUILDDIR»/Code/ExternalCode/MegaVTK -I/«PKGBUILDDIR»/build/Code/GUI/src -I/«PKGBUILDDIR»/Code/GUI/src -I/«PKGBUILDDIR»/build/Interfaces -I/«PKGBUILDDIR»/Interfaces -I/«PKGBUILDDIR»/build/Code/GUI/lib/LineageViewer -I/«PKGBUILDDIR»/Code/GUI/lib/LineageViewer -I/«PKGBUILDDIR»/build/Code/GUI/lib/TransferFunctionEditor -I/«PKGBUILDDIR»/Code/GUI/lib/TransferFunctionEditor -I/«PKGBUILDDIR»/build/Code/GUI/lib/TraceEditing -I/«PKGBUILDDIR»/Code/GUI/lib/TraceEditing -I/«PKGBUILDDIR»/build/Code/GUI/lib/Wizard -I/«PKGBUILDDIR»/Code/GUI/lib/Wizard -I/«PKGBUILDDIR»/build/Code/GUI/lib/Video -I/«PKGBUILDDIR»/Code/GUI/lib/Video -I/«PKGBUILDDIR»/build/Code/GUI/lib/VisualizationTraceContainers -I/«PKGBUILDDIR»/Code/GUI/lib/VisualizationTraceContainers -I/«PKGBUILDDIR»/build/Code/GUI/lib/SynchronizedViews -I/«PKGBUILDDIR»/Code/GUI/lib/DBManager -I/«PKGBUILDDIR»/build/Code/GUI/lib/Resources -I/«PKGBUILDDIR»/build/Code/GUI/lib -I/«PKGBUILDDIR»/Code/GUI/lib -I/«PKGBUILDDIR»/build/Code/GUI -I/«PKGBUILDDIR»/Code/GUI -I/«PKGBUILDDIR»/build/Code/Filters/Mesh/Merge -I/«PKGBUILDDIR»/Code/Filters/Mesh/Merge -I/«PKGBUILDDIR»/build/Code/Filters/Mesh/Split -I/«PKGBUILDDIR»/Code/Filters/Mesh/Split -I/«PKGBUILDDIR»/build/Code/Filters/Mesh/Attributes -I/«PKGBUILDDIR»/Code/Filters/Mesh/Attributes -I/«PKGBUILDDIR»/build/Code/Filters/Mesh -I/«PKGBUILDDIR»/Code/Filters/Mesh -I/«PKGBUILDDIR»/build/Code/Filters/Contour -I/«PKGBUILDDIR»/Code/Filters/Contour -I/«PKGBUILDDIR»/build/Code/Filters -I/«PKGBUILDDIR»/Code/Filters -I/«PKGBUILDDIR»/build/Code/IO/GoImage -I/«PKGBUILDDIR»/Code/IO/GoImage -I/«PKGBUILDDIR»/build/Code/IO/GoDBRow -I/«PKGBUILDDIR»/Code/IO/GoDBRow -I/«PKGBUILDDIR»/build/Code/IO -I/«PKGBUILDDIR»/Code/IO -I/«PKGBUILDDIR»/build/Code -I/«PKGBUILDDIR»/Code -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4 -I/usr/share/qt4/mkspecs/default -isystem /usr/include/qt4/QtGui -I/usr/include/qt4/Qt3Support -I/usr/include/qt4/QtSvg -I/usr/include/qt4/QtScript -I/usr/include/qt4/QtTest -I/usr/include/qt4/QtUiTools -I/usr/include/qt4/QtHelp -I/usr/include/qt4/QtWebKit -I/usr/include/qt4/QtXmlPatterns -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtSql -I/usr/include/qt4/QtXml -I/usr/include/qt4/QtDesigner -I/usr/include/qt4/QtDBus -I/usr/include/qt4/QtScriptTools -I/usr/include/qt4/QtDeclarative -I/usr/include/InsightToolkit/Review/Statistics -I/usr/include/InsightToolkit/Review -I/usr/include/InsightToolkit/Utilities/vxl/core -I/usr/include/InsightToolkit/Utilities/vxl/vcl -I/usr/include/InsightToolkit/Utilities/vxl/v3p/netlib -I/usr/include/InsightToolkit/Utilities -I/usr/include/InsightToolkit/Utilities/itkExtHdrs -I/usr/include/InsightToolkit/Utilities/nifti/znzlib -I/usr/include/InsightToolkit/Utilities/nifti/niftilib -I/usr/include/InsightToolkit/Utilities/expat -I/usr/include/InsightToolkit/Utilities/DICOMParser -I/usr/include/InsightToolkit/Utilities/NrrdIO -I/usr/include/InsightToolkit/Utilities/MetaIO -I/usr/include/InsightToolkit/SpatialObject -I/usr/include/InsightToolkit/Numerics/NeuralNetworks -I/usr/include/InsightToolkit/Numerics/FEM -I/usr/include/InsightToolkit/IO -I/usr/include/InsightToolkit/Numerics -I/usr/include/InsightToolkit/Common -I/usr/include/InsightToolkit/BasicFilters -I/usr/include/InsightToolkit/Algorithms -I/usr/include/InsightToolkit -I/usr/include/vtk-5.8 -I/usr/include/gdcm-2.4    -o CMakeFiles/QGoIO.dir/QueryBuilderHelper.cxx.o -c /«PKGBUILDDIR»/Code/IO/QueryBuilderHelper.cxx
In file included from /usr/include/InsightToolkit/Utilities/vxl/vcl/vcl_limits.h:5:0,
                 from /usr/include/InsightToolkit/Common/itkNumericTraits.h:31,
                 from /«PKGBUILDDIR»/Code/IO/itkMegaCaptureReader.cxx:36:
/usr/include/InsightToolkit/Utilities/vxl/vcl/vcl_compiler.h:123:4: error: #error "Dunno about this gcc"
 #  error "Dunno about this gcc"
    ^
make[3]: *** [Code/IO/CMakeFiles/QGoIO.dir/GoImage/GoImageProcessor.cxx.o] Error 1
make[3]: *** Waiting for unfinished jobs....
Code/IO/CMakeFiles/QGoIO.dir/build.make:816: recipe for target 'Code/IO/CMakeFiles/QGoIO.dir/GoImage/GoImageProcessor.cxx.o' failed
make[3]: *** [Code/IO/CMakeFiles/QGoIO.dir/GoImage/GoMegaImageProcessor.cxx.o] Error 1
Code/IO/CMakeFiles/QGoIO.dir/build.make:839: recipe for target 'Code/IO/CMakeFiles/QGoIO.dir/GoImage/GoMegaImageProcessor.cxx.o' failed
make[3]: *** [Code/IO/CMakeFiles/QGoIO.dir/GoImage/GoLSMImageProcessor.cxx.o] Error 1
Code/IO/CMakeFiles/QGoIO.dir/build.make:862: recipe for target 'Code/IO/CMakeFiles/QGoIO.dir/GoImage/GoLSMImageProcessor.cxx.o' failed
make[3]: *** [Code/IO/CMakeFiles/QGoIO.dir/itkMegaCaptureReader.cxx.o] Error 1
Code/IO/CMakeFiles/QGoIO.dir/build.make:908: recipe for target 'Code/IO/CMakeFiles/QGoIO.dir/itkMegaCaptureReader.cxx.o' failed
make[2]: *** [Code/IO/CMakeFiles/QGoIO.dir/all] Error 2
make[3]: Leaving directory '/«PKGBUILDDIR»/build'
CMakeFiles/Makefile2:1329: recipe for target 'Code/IO/CMakeFiles/QGoIO.dir/all' failed
make[2]: Leaving directory '/«PKGBUILDDIR»/build'
make[1]: *** [all] Error 2
Makefile:150: recipe for target 'all' failed
make[1]: Leaving directory '/«PKGBUILDDIR»/build'
dh_auto_build: make -j10 returned exit code 2
make: *** [build-arch] Error 2
debian/rules:31: recipe for target 'build-arch' failed
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2



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