[Debian-med-packaging] Bug#777913: insighttoolkit4: ftbfs with GCC-5

[Matthias Klose]

Package: src:insighttoolkit4
Version: 4.6.0-3
Severity: normal
Tags: sid stretch
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-5

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-5/g++-5, but succeeds to build with gcc-4.9/g++-4.9. The
severity of this report may be raised before the stretch release.

The full build log can be found at:
http://people.debian.org/~doko/logs/gcc5-20150205/insighttoolkit4_4.6.0-3_unstable_gcc5.log
The last lines of the build log are at the end of this report.

To build with GCC 5, either set CC=gcc-5 CXX=g++-5 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t experimental install g++ 

Common build failures are C11 as the default C mode, new warnings
resulting in build failures with -Werror turned on, or new/dropped
symbols in Debian symbols files.  For other C/C++ related build failures
see the porting guide at http://gcc.gnu.org/gcc-5/porting_to.html

[...]
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/BUILD/CMakeFiles 
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/b9415b821421bb8be4def9aa4c0b3992"
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv4/test/Baseline/BSplineWarping1Test.png
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/201d2b4cc8b069c3798e9a165b65ad0e"
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv4/test/Baseline/DeformableRegistration12Test.png
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv4/test/Baseline/BSplineWarping1Test.png -Dname=/«PKGBUILDDIR»/Examples/RegistrationITKv4/test/Baseline/BSplineWarping1Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv4/test/Baseline/DeformableRegistration12Test.png -Dname=/«PKGBUILDDIR»/Examples/RegistrationITKv4/test/Baseline/DeformableRegistration12Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/BUILD/CMakeFiles 
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/6e094a742c77d0fe628c1a407c4439a7"
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/BUILD/CMakeFiles 
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/LandmarkWarping2Test.png
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv4/test/Baseline/DeformableRegistration13Test.png
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/LandmarkWarping2Test.png -Dname=/«PKGBUILDDIR»/Testing/Data/Baseline/Registration/LandmarkWarping2Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv4/test/Baseline/DeformableRegistration13Test.png -Dname=/«PKGBUILDDIR»/Examples/RegistrationITKv4/test/Baseline/DeformableRegistration13Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
[ 13%] [ 13%] /usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/BUILD/CMakeFiles 
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/cd6311a99be017655a88ef869488f1dd"
[ 13%] -- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/73c4f57340d1c4f15e04b3c79a31c7f6"
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/BUILD/CMakeFiles 
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/84d6cd7a14b825716fbe5f40e1ccc8fb"
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/BUILD/CMakeFiles 
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/da24b237f30c5f16251ec223d0654c11"
[ 13%] Generating /«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/ImageRegistration12TestPixelCentered.png
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/ITKv3ImageRegistration5Test2PixelCentered.png
[ 13%] Generating /«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/ITKv3ImageRegistration4Test.png
[ 13%] /usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/ImageRegistration12TestPixelCentered.png -Dname=/«PKGBUILDDIR»/Testing/Data/Baseline/Registration/ImageRegistration12TestPixelCentered.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/ITKv3ImageRegistration5Test2PixelCentered.png -Dname=/«PKGBUILDDIR»/Testing/Data/Baseline/Registration/ITKv3ImageRegistration5Test2PixelCentered.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Testing/Data/Baseline/Registration/ITKv3ImageRegistration4Test.png -Dname=/«PKGBUILDDIR»/Testing/Data/Baseline/Registration/ITKv3ImageRegistration4Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/88285a115d88220eb4e9c2da64ec8356"
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/baebc6fbf4aeafd1e094f0c1ee7b7acf"
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv3/test/Baseline/DeformableRegistration12Test.png
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/e85b80d08a9e285d3fba75a81e6f5bde"
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv3/test/Baseline/DeformableRegistration13Test.png
Generating /«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv3/test/Baseline/BSplineWarping1Test.png
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv3/test/Baseline/BSplineWarping1Test.png -Dname=/«PKGBUILDDIR»/Examples/RegistrationITKv3/test/Baseline/BSplineWarping1Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv3/test/Baseline/DeformableRegistration12Test.png -Dname=/«PKGBUILDDIR»/Examples/RegistrationITKv3/test/Baseline/DeformableRegistration12Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
/usr/bin/cmake -Drelative_top=/«PKGBUILDDIR»/BUILD -Dfile=/«PKGBUILDDIR»/BUILD/ExternalData/Examples/RegistrationITKv3/test/Baseline/DeformableRegistration13Test.png -Dname=/«PKGBUILDDIR»/Examples/RegistrationITKv3/test/Baseline/DeformableRegistration13Test.png -Dext=.md5 -DExternalData_ACTION=fetch -DExternalData_CONFIG=/«PKGBUILDDIR»/BUILD/ITKData_config.cmake -P /«PKGBUILDDIR»/CMake/ExternalData.cmake
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/73c4f57340d1c4f15e04b3c79a31c7f6"
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/cd6311a99be017655a88ef869488f1dd"
-- Found object: "/«PKGBUILDDIR»/.ExternalData/MD5/da24b237f30c5f16251ec223d0654c11"
make[3]: Leaving directory '/«PKGBUILDDIR»/BUILD'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/BUILD/CMakeFiles  13 14 15 16 17 18 19 20 21 22
[ 13%] Built target ITKData
make[2]: Leaving directory '/«PKGBUILDDIR»/BUILD'
make[1]: *** [all] Error 2
Makefile:150: recipe for target 'all' failed
make[1]: Leaving directory '/«PKGBUILDDIR»/BUILD'
dh_auto_build: make -j10 returned exit code 2
make: *** [build-arch] Error 2
debian/rules:84: recipe for target 'build-arch' failed
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2